From e81db472eac2268254328de11916c31e3b88bde7 Mon Sep 17 00:00:00 2001 From: MattWellie Date: Mon, 28 Oct 2024 16:44:27 +1000 Subject: [PATCH] debug logging in gCNV --- cpg_workflows/stages/gcnv.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/cpg_workflows/stages/gcnv.py b/cpg_workflows/stages/gcnv.py index 1978591f6..0b809b425 100644 --- a/cpg_workflows/stages/gcnv.py +++ b/cpg_workflows/stages/gcnv.py @@ -357,7 +357,7 @@ def queue_jobs(self, cohort: Cohort, inputs: StageInput) -> StageOutput: get_logger().info(f'Using XY-trimmed VCF for {sgid}') all_vcfs.append(str(trimmed_vcfs[sgid])) elif sgid in cnv_vcfs: - get_logger().warning(f'Using standard VCF for {sgid}') + get_logger().debug(f'Using standard VCF for {sgid}') all_vcfs.append(str(cnv_vcfs[sgid]['segments'])) else: raise ValueError(f'No VCF found for {sgid}')