From 1d00240f88f15a643c700acfdb1afb4431846030 Mon Sep 17 00:00:00 2001
From: EddieLF <34049565+EddieLF@users.noreply.github.com>
Date: Thu, 11 Apr 2024 10:46:57 +1000
Subject: [PATCH] Stringify the reference_path (#53)

---
 reference_generating_scripts/convert_bed_to_interval_list.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/reference_generating_scripts/convert_bed_to_interval_list.py b/reference_generating_scripts/convert_bed_to_interval_list.py
index 6c33b9e..3a7ad67 100644
--- a/reference_generating_scripts/convert_bed_to_interval_list.py
+++ b/reference_generating_scripts/convert_bed_to_interval_list.py
@@ -40,7 +40,7 @@ def main(bed_ref, sd_ref, out_ref):
     Converts a BED file to a .interval_list file using Picard BedToIntervalList.
     The output file must have been added to references.py.
     """
-    out_ref = reference_path(out_ref)
+    out_ref = str(reference_path(out_ref))
     if not out_ref.endswith('.interval_list'):
         raise ValueError('Output reference file must have a .interval_list extension.')
     get_ref_files(bed_ref, sd_ref, out_ref)