diff --git a/str/annotate/bedtools_intersector.py b/str/annotate/bedtools_intersector.py index 5014fd08..92a7513f 100644 --- a/str/annotate/bedtools_intersector.py +++ b/str/annotate/bedtools_intersector.py @@ -13,7 +13,7 @@ from cpg_utils.hail_batch import get_batch, output_path CATALOG_PATH = 'gs://cpg-bioheart-test/str/ncAnnot.v0.14.jul2024.bed' -TR_PATH = 'gs://cpg-bioheart-test/str/arthur/eTRs.bed' +TR_PATH = 'gs://cpg-bioheart-test/str/arthur/fm_eTRs.bed' # Initializing Batch @@ -34,6 +34,6 @@ bedtools_job.command(f'bedtools intersect -a {tr} -b {catalog} -wo > {bedtools_job.ofile}') # write output to GCP bucket for this dataset -b.write_output(bedtools_job.ofile, 'gs://cpg-bioheart-test/str/arthur/eTRs_intersect.bed') +b.write_output(bedtools_job.ofile, 'gs://cpg-bioheart-test/str/arthur/fm_eTRs_intersect.bed') b.run(wait=False) \ No newline at end of file