diff --git a/str/indel_locus_extractor.py b/str/indel_locus_extractor.py index 7be889c7..d8f3e4e2 100644 --- a/str/indel_locus_extractor.py +++ b/str/indel_locus_extractor.py @@ -15,10 +15,9 @@ import click from cpg_utils.config import get_config +from cpg_utils.hail_batch import output_path, init_batch from cpg_workflows.batch import get_batch -from cpg_utils import to_path -from cpg_utils.hail_batch import output_path, init_batch config = get_config() @@ -51,7 +50,7 @@ def main(file_path): hail_job.image(config['workflow']['driver_image']) hail_job.storage('20G') hail_job.cpu(4) - gcs_output_path = output_path(f'indels.tsv') + gcs_output_path = output_path(f'indels.tsv', 'analysis') hail_job.call(indel_coordinate_extractor, file_path, gcs_output_path) b.run(wait=False)