From c3561894144bc3b48a857633f2a07894e52073e5 Mon Sep 17 00:00:00 2001 From: hopedisastro <40783500+hopedisastro@users.noreply.github.com> Date: Wed, 13 Dec 2023 17:23:27 +1100 Subject: [PATCH] Update indel_locus_extractor.py --- str/indel_locus_extractor.py | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/str/indel_locus_extractor.py b/str/indel_locus_extractor.py index 7be889c7..d8f3e4e2 100644 --- a/str/indel_locus_extractor.py +++ b/str/indel_locus_extractor.py @@ -15,10 +15,9 @@ import click from cpg_utils.config import get_config +from cpg_utils.hail_batch import output_path, init_batch from cpg_workflows.batch import get_batch -from cpg_utils import to_path -from cpg_utils.hail_batch import output_path, init_batch config = get_config() @@ -51,7 +50,7 @@ def main(file_path): hail_job.image(config['workflow']['driver_image']) hail_job.storage('20G') hail_job.cpu(4) - gcs_output_path = output_path(f'indels.tsv') + gcs_output_path = output_path(f'indels.tsv', 'analysis') hail_job.call(indel_coordinate_extractor, file_path, gcs_output_path) b.run(wait=False)