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IRS_norm_log.txt
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IRS_norm_log.txt
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Python 3.6.6 |Anaconda custom (64-bit)| (default, Jun 28 2018, 11:07:29)
[GCC 4.2.1 Compatible Clang 4.0.1 (tags/RELEASE_401/final)] on darwin
Type "copyright", "credits" or "license()" for more information.
>>>
======= RESTART: /Users/pwilmart/Box Sync/Github_misc/TMT_analysis_examples/Yeast_triple_KO/pandas_TMT_IRS_norm_first9.py =======
=================================================================
pandas_TMT_IRS_norm.py, v1.0.1, written by Phil Wilmarth 2017-8
=================================================================
select a protein results file with TMT intensities and sample key:
processing: labeled_Fusion_PAW_grouped_protein_summary_TMT_8.txt
proteins in results file: 778
total number of non-contaminant proteins: 771
contamaminant and decoy count: 7
..394 proteins were not quantifiable in m06677
..395 proteins were not quantifiable in m06679
..412 proteins were not quantifiable in m06681
..proteins with no intensities experiment-wide: 329
m06677 SL Norm Factors:
TotInt_126C_m06677: 1.084064
TotInt_127N_m06677: 1.115132
TotInt_127C_m06677: 1.044255
TotInt_128N_m06677: 0.904809
TotInt_128C_m06677: 0.976333
TotInt_129N_m06677: 0.934427
TotInt_129C_m06677: 1.006083
TotInt_130N_m06677: 1.059125
TotInt_130C_m06677: 1.025942
TotInt_131N_m06677: 1.012454
TotInt_131C_m06677: 1.012454
m06679 SL Norm Factors:
TotInt_126C_m06679: 1.034109
TotInt_127N_m06679: 1.057731
TotInt_127C_m06679: 0.986797
TotInt_128N_m06679: 0.850191
TotInt_128C_m06679: 0.916422
TotInt_129N_m06679: 0.876464
TotInt_129C_m06679: 0.953432
TotInt_130N_m06679: 0.995697
TotInt_130C_m06679: 0.966751
TotInt_131N_m06679: 0.955239
TotInt_131C_m06679: 0.955239
m06681 SL Norm Factors:
TotInt_126C_m06681: 1.129548
TotInt_127N_m06681: 1.149165
TotInt_127C_m06681: 1.073065
TotInt_128N_m06681: 0.920988
TotInt_128C_m06681: 0.986165
TotInt_129N_m06681: 0.942264
TotInt_129C_m06681: 1.030455
TotInt_130N_m06681: 1.086157
TotInt_130C_m06681: 1.053355
TotInt_131N_m06681: 1.035795
TotInt_131C_m06681: 1.035795
number of non-contaminant/decoy proteins: 771
number of proteins with full intensity sets: 307
>>>
======= RESTART: /Users/pwilmart/Box Sync/Github_misc/TMT_analysis_examples/Yeast_triple_KO/pandas_TMT_IRS_norm_first9.py =======
=================================================================
pandas_TMT_IRS_norm.py, v1.0.1, written by Phil Wilmarth 2017-8
=================================================================
select a protein results file with TMT intensities and sample key:
processing: labeled_Lumos_PAW_grouped_protein_summary_TMT_8.txt
proteins in results file: 778
total number of non-contaminant proteins: 771
contamaminant and decoy count: 7
..264 proteins were not quantifiable in L00760
..275 proteins were not quantifiable in L00762
..281 proteins were not quantifiable in L00764
..proteins with no intensities experiment-wide: 202
L00760 SL Norm Factors:
TotInt_126C_L00760: 1.036926
TotInt_127N_L00760: 1.057582
TotInt_127C_L00760: 1.005425
TotInt_128N_L00760: 0.857497
TotInt_128C_L00760: 0.948323
TotInt_129N_L00760: 0.908336
TotInt_129C_L00760: 0.990443
TotInt_130N_L00760: 1.039194
TotInt_130C_L00760: 1.017360
TotInt_131N_L00760: 0.980284
TotInt_131C_L00760: 0.980284
L00762 SL Norm Factors:
TotInt_126C_L00762: 1.064280
TotInt_127N_L00762: 1.082499
TotInt_127C_L00762: 1.029124
TotInt_128N_L00762: 0.885682
TotInt_128C_L00762: 0.981026
TotInt_129N_L00762: 0.937235
TotInt_129C_L00762: 1.012263
TotInt_130N_L00762: 1.060203
TotInt_130C_L00762: 1.041779
TotInt_131N_L00762: 1.006546
TotInt_131C_L00762: 1.006546
L00764 SL Norm Factors:
TotInt_126C_L00764: 1.070271
TotInt_127N_L00764: 1.088074
TotInt_127C_L00764: 1.034911
TotInt_128N_L00764: 0.892739
TotInt_128C_L00764: 0.989770
TotInt_129N_L00764: 0.944557
TotInt_129C_L00764: 1.021929
TotInt_130N_L00764: 1.067948
TotInt_130C_L00764: 1.048488
TotInt_131N_L00764: 1.013797
TotInt_131C_L00764: 1.013797
number of non-contaminant/decoy proteins: 771
number of proteins with full intensity sets: 431
>>>
======= RESTART: /Users/pwilmart/Box Sync/Github_misc/TMT_analysis_examples/Yeast_triple_KO/pandas_TMT_IRS_norm_first9.py =======
=================================================================
pandas_TMT_IRS_norm.py, v1.0.1, written by Phil Wilmarth 2017-8
=================================================================
select a protein results file with TMT intensities and sample key:
processing: labeled_MS2_Lumos_PAW_grouped_protein_summary_TMT_8.txt
proteins in results file: 778
total number of non-contaminant proteins: 771
contamaminant and decoy count: 7
..26 proteins were not quantifiable in L00761
..38 proteins were not quantifiable in L00763
..26 proteins were not quantifiable in L00765
..proteins with no intensities experiment-wide: 2
L00761 SL Norm Factors:
TotInt_126C_L00761: 1.002259
TotInt_127N_L00761: 1.062642
TotInt_127C_L00761: 1.000163
TotInt_128N_L00761: 0.899148
TotInt_128C_L00761: 1.000349
TotInt_129N_L00761: 0.949667
TotInt_129C_L00761: 0.996803
TotInt_130N_L00761: 1.032619
TotInt_130C_L00761: 1.006489
TotInt_131N_L00761: 0.992433
TotInt_131C_L00761: 0.992433
L00763 SL Norm Factors:
TotInt_126C_L00763: 1.046768
TotInt_127N_L00763: 1.072439
TotInt_127C_L00763: 1.008933
TotInt_128N_L00763: 0.896627
TotInt_128C_L00763: 0.997891
TotInt_129N_L00763: 0.944699
TotInt_129C_L00763: 1.001396
TotInt_130N_L00763: 1.039628
TotInt_130C_L00763: 1.009821
TotInt_131N_L00763: 0.999375
TotInt_131C_L00763: 0.999375
L00765 SL Norm Factors:
TotInt_126C_L00765: 1.060893
TotInt_127N_L00765: 1.079050
TotInt_127C_L00765: 1.017172
TotInt_128N_L00765: 0.904237
TotInt_128C_L00765: 1.005627
TotInt_129N_L00765: 0.954085
TotInt_129C_L00765: 1.011119
TotInt_130N_L00765: 1.047231
TotInt_130C_L00765: 1.019419
TotInt_131N_L00765: 1.008319
TotInt_131C_L00765: 1.008319
number of non-contaminant/decoy proteins: 771
number of proteins with full intensity sets: 700
>>>