Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Error with ROSE_bamToGFF.py and ROSE_bamToGFF_turbo.py #2

Open
biobug16 opened this issue Oct 6, 2019 · 0 comments
Open

Error with ROSE_bamToGFF.py and ROSE_bamToGFF_turbo.py #2

biobug16 opened this issue Oct 6, 2019 · 0 comments

Comments

@biobug16
Copy link

biobug16 commented Oct 6, 2019

Hi I am trying to run ROSE_bamToGFF.py and ROSE_bamToGFF_turbo.py to generate bam.gff but getting following errors. Any help or explanation will be really helpful.

Traceback (most recent call last):
File "ROSE_bamToGFF_turbo.py", line 225, in
main()
File "ROSE_bamToGFF_turbo.py", line 218, in main
unParseTable(newGFF,output,'\t')
UnboundLocalError: local variable 'newGFF' referenced before assignment

#####################
And with ROSE_bamToGFF.py:
#####################

Traceback (most recent call last):
File "ROSE_bamToGFF.py", line 247, in
main()
File "ROSE_bamToGFF.py", line 241, in main
ROSE_utils.unParseTable(newGFF,output,'\t')
UnboundLocalError: local variable 'newGFF' referenced before assignment

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant