render-rmarkdown.yaml

# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
  push:
    branches: master
  schedule:
    - cron: '0 0 * * MON'


name: render website

jobs:
  render:
    name: Rebuild Website
    runs-on: macOS-latest
    steps:
      - uses: actions/checkout@v3
      - uses: r-lib/actions/setup-r@v2
      - uses: r-lib/actions/setup-pandoc@v2
      
      - name: Install rmarkdown
        run: Rscript -e 'install.packages("rmarkdown")'
      - name: Install distill
        run: Rscript -e 'install.packages("distill")'
      - name: Install httr
        run: Rscript -e 'install.packages("httr")'
      - name: Install jsonlite
        run: Rscript -e 'install.packages("jsonlite")'
      - name: Install here
        run: Rscript -e 'install.packages("here")'
      - name: Install mapboxapi
        run: Rscript -e 'install.packages("mapboxapi", type = "binary")'
      - name: Install tidyverse
        run: Rscript -e 'install.packages("tidyverse")'
      - name: Install emojifont
        run: Rscript -e 'install.packages("emojifont")'
      - name: Install DT
        run: Rscript -e 'install.packages("DT")'
      - name: Install janitor
        run: Rscript -e 'install.packages("janitor")'
      - name: Install kableExtra
        run: Rscript -e 'install.packages("kableExtra")'
        
      - name: Get data from clinicaltrials.gov and rebuild site
        env: 
          MAPBOX: ${{ secrets.MAPBOX }}
        run: Rscript R/update_website.R
        
      - name: Render Rmarkdown files and Commit Results
        run: |
          git add .
          git commit -m 'Re-build website' || echo "No changes to commit"
          git push origin || echo "No changes to commit"