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considered_samples=included_samples, wes_filtering=args.wes_filtering, artifacts=common_vars)
File "/bgfs/alee/LO_LAB/Personal/Alexander_Chang/alc376/wholebody_phylo/treeomics/treeomics/patient.py", line 628, in read_vcf_directory
artifacts=artifacts)
File "/bgfs/alee/LO_LAB/Personal/Alexander_Chang/alc376/wholebody_phylo/treeomics/treeomics/patient.py", line 739, in _process_samples
status = self._add_variant(tmp_vars, fpr, artifacts, wes_filtering=wes_filtering)
File "/bgfs/alee/LO_LAB/Personal/Alexander_Chang/alc376/wholebody_phylo/treeomics/treeomics/patient.py", line 1031, in _add_variant
filter_variant(mut_key, Filter.MIN_VAR_COV)
File "/bgfs/alee/LO_LAB/Personal/Alexander_Chang/alc376/wholebody_phylo/treeomics/treeomics/patient.py", line 1009, in filter_variant
del self.sample_coverages[sa_name][-1]
IndexError: list assignment index out of range
Do you have any idea how to fix this or what was causing the error?
The text was updated successfully, but these errors were encountered:
Hi,
I'm trying to run treeomics on the mutect2 data and ran into the following error.
tail teeomics.log
tail error output file
Do you have any idea how to fix this or what was causing the error?
The text was updated successfully, but these errors were encountered: