You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I got an error when running 'ariba getref ncbi out.ncbi' in Docker.
The error is: ImportError: Bio.Alphabet has been removed from Biopython. In many cases, the alphabet can simply be ignored and removed from scripts. In a few cases, you may need to specify the molecule_type as an annotation on a SeqRecord for your script to work correctly. Please see https://biopython.org/wiki/Alphabet for more information.
Should Ariba's Docker image contain compatible packages needed for running Ariba commands? Please help with this issue! Thanks!
The text was updated successfully, but these errors were encountered:
I got an error when running 'ariba getref ncbi out.ncbi' in Docker.
The error is:
ImportError: Bio.Alphabet has been removed from Biopython. In many cases, the alphabet can simply be ignored and removed from scripts. In a few cases, you may need to specify the
molecule_type
as an annotation on a SeqRecord for your script to work correctly. Please see https://biopython.org/wiki/Alphabet for more information.Should Ariba's Docker image contain compatible packages needed for running Ariba commands? Please help with this issue! Thanks!
The text was updated successfully, but these errors were encountered: