From 0f53688ea19f1750ffaf821b7765f028d9ad5b47 Mon Sep 17 00:00:00 2001 From: tobgan Date: Thu, 16 Nov 2023 20:28:33 +0100 Subject: [PATCH] Update src/scirpy/ir_dist/metrics.py Co-authored-by: Gregor Sturm --- src/scirpy/ir_dist/metrics.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/scirpy/ir_dist/metrics.py b/src/scirpy/ir_dist/metrics.py index 0c8c8f4d4..01a3ce6d6 100644 --- a/src/scirpy/ir_dist/metrics.py +++ b/src/scirpy/ir_dist/metrics.py @@ -519,7 +519,7 @@ class FastAlignmentDistanceCalculator(ParallelDistanceCalculator): The choice of an expected penalty is likely influenced by similar considerations as the other parameters. Essentially, this can be thought of as a superficial (dis)similarity measure. A higher value more strongly penalizes mismatching characters and is more in line - with looking for closely related sequence paris, while a lower value is more forgiving + with looking for closely related sequence pairs, while a lower value is more forgiving and better suited when looking for more distantly related sequence pairs. Parameters