From 2157800c905733d920696a5e414cf45418e5e1eb Mon Sep 17 00:00:00 2001
From: Gregor Sturm <mail@gregor-sturm.de>
Date: Tue, 15 Oct 2024 09:04:25 +0200
Subject: [PATCH] Add optional dependencies to [test] (#562)

* Update pyproject.toml

* Update test.yaml

* Update CHANGELOG.md

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
---
 .github/workflows/test.yaml | 2 +-
 CHANGELOG.md                | 4 ++++
 pyproject.toml              | 4 ++++
 3 files changed, 9 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/test.yaml b/.github/workflows/test.yaml
index 76ee1c6b8..2bfe23276 100644
--- a/.github/workflows/test.yaml
+++ b/.github/workflows/test.yaml
@@ -52,7 +52,7 @@ jobs:
           python -m pip install --upgrade pip wheel
       - name: Install dependencies
         run: |
-          pip install ${{ matrix.pip-flags }} ".[dev,test,rpack,dandelion,diversity,parasail]"
+          pip install ${{ matrix.pip-flags }} ".[dev,test]"
       - name: Test
         env:
           MPLBACKEND: agg
diff --git a/CHANGELOG.md b/CHANGELOG.md
index 0fbdd0765..948438ac5 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -14,6 +14,10 @@ and this project adheres to [Semantic Versioning][].
 
 -   Add a `mask_obs` argument to `tl.clonotype_network` that allows to compute the clonotype networks on a subset of the cells ([#557](https://github.com/scverse/scirpy/pull/557)).
 
+### Fixes
+
+-   Add all optional dependencies required for testing to the `[test]` dependency group ([#562](https://github.com/scverse/scirpy/pull/562)).
+
 ## v0.18.0
 
 ### Additions
diff --git a/pyproject.toml b/pyproject.toml
index fa27fcd8a..44e5b5444 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -75,6 +75,10 @@ test = [
     'pytest',
     'coverage',
     'black',
+    'sc-dandelion>=0.3.5',
+    'scikit-bio>=0.5.7',
+    'rectangle-packer',
+    'parasail != 1.2.1',
 ]
 dandelion = [
     'sc-dandelion>=0.3.5',