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DESCRIPTION
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DESCRIPTION
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Package: TMExplorer
Title:
A Collection of Tumour Microenvironment Single-cell RNA Sequencing Datasets
and Corresponding Metadata
Version: 1.7.2
Authors@R:
c(person(given = "Erik",
family = "Christensen",
role = c("aut", "cre"),
email = "echris3@uwo.ca"),
person(given= "Alaine",
family = "Naidas",
role = c("aut")),
person(given= "David",
family = "Chen",
role = c("aut")),
person(given="Parisa",
family="Shooshtari",
role = c("aut"),
email="pshoosh@uwo.ca"))
Description:
This package provides a tool to search and download a collection of tumour
microenvironment single-cell RNA sequencing datasets and their metadata.
TMExplorer aims to act as a single point of entry for users looking to study
the tumour microenvironment at the single cell level. Users can quickly
search available datasets using the metadata table and then download the
ones they are interested in for analysis.
License: Artistic-2.0
Encoding: UTF-8
LazyData: FALSE
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
VignetteBuilder: knitr
Suggests: BiocStyle, knitr, rmarkdown
Imports: methods, Matrix
Depends:
R (>= 4.1),
SingleCellExperiment,
BiocFileCache
biocViews:
CancerData,
SingleCellData,
RNASeqData,
SequencingData,
ExpressionData,
GEO,
PackageTypeData
BugReports: https://github.com/shooshtarilab/TMExplorer/issues