JOSS Review: Example Notebook 6_inversion.ipynb

[kujaku11]

Running Jupyter notebook examples/6_Inversion.ipynb produces the following error in the 7th cell down [using pip install --> v0.3 and notebooks from main branch]:

---------------------------------------------------------------------------
RemoteTraceback                           Traceback (most recent call last)
RemoteTraceback: 
"""
Traceback (most recent call last):
  File "[\Anaconda3\envs\pide\lib\multiprocessing\pool.py", line 125](file://Anaconda3/envs/pide/lib/multiprocessing/pool.py#line=124), in worker
    result = (True, func(*args, **kwds))
  File "[\Anaconda3\envs\pide\lib\multiprocessing\pool.py", line 48](file://Anaconda3/envs/pide/lib/multiprocessing/pool.py#line=47), in mapstar
    return list(map(*args))
  File "[\Anaconda3\envs\pide\lib\site-packages\pide\inversion.py", line 58](file://Anaconda3/envs/pide/lib/site-packages/pide/inversion.py#line=57), in _solv_cond_
    object.mantle_water_distribute(method = 'index', sol_idx = index)
  File "[\Anaconda3\envs\pide\lib\site-packages\pide\pide.py", line 4398](file://Anaconda3/envs/pide/lib/site-packages/pide/pide.py#line=4397), in mantle_water_distribute
    pide.ol_water[idx_node] = self.solid_water[idx_node] / (self.ol_frac_wt[idx_node] + ((self.opx_frac_wt[idx_node] * self.d_opx_ol[idx_node]) +\
AttributeError: type object 'pide' has no attribute 'ol_water'
"""

The above exception was the direct cause of the following exception:

AttributeError                            Traceback (most recent call last)
Cell In[7], line 1
----> 1 c_list, residual_list = conductivity_solver_single_param(object = p_obj, cond_list = cond_list_to_invert,
      2 param_name = 'bulk_water', upper_limit_list = max_water, lower_limit_list= np.zeros(len(max_water)),
      3 search_start = 30, acceptence_threshold = 0.5, num_cpu = 5)

File [~\Anaconda3\envs\pide\lib\site-packages\pide\inversion.py:253](http://localhost:8888/lab/tree/pide/examples/notebooks/~/Anaconda3/envs/pide/lib/site-packages/pide/inversion.py#line=252), in conductivity_solver_single_param(object, cond_list, param_name, upper_limit_list, lower_limit_list, search_start, acceptence_threshold, cond_err, transition_zone, num_cpu, **kwargs)
    247 with multiprocessing.Pool(processes=num_cpu) as pool:
    249 	process_item_partial = partial(_solv_cond_, cond_list = cond_list, object = object, param = param_name, upperlimit = upper_limit_list,
    250 	lowerlimit=lower_limit_list , search_increment= search_start, acceptence_threshold = acceptence_threshold, init_guess = 0, transition_zone = transition_zone,
    251 	water_solv=water_solv,comp_solv = comp_solv, comp_type = comp_type, comp_index = comp_index, low_value_threshold = low_value_threshold)
--> 253 	c = pool.map(process_item_partial, index_list)
    255 c_list = [x[0] for x in c]
    256 residual_list= [x[1] for x in c]

File [~\Anaconda3\envs\pide\lib\multiprocessing\pool.py:364](http://localhost:8888/lab/tree/pide/examples/notebooks/~/Anaconda3/envs/pide/lib/multiprocessing/pool.py#line=363), in Pool.map(self, func, iterable, chunksize)
    359 def map(self, func, iterable, chunksize=None):
    360     '''
    361     Apply `func` to each element in `iterable`, collecting the results
    362     in a list that is returned.
    363     '''
--> 364     return self._map_async(func, iterable, mapstar, chunksize).get()

File [~\Anaconda3\envs\pide\lib\multiprocessing\pool.py:771](http://localhost:8888/lab/tree/pide/examples/notebooks/~/Anaconda3/envs/pide/lib/multiprocessing/pool.py#line=770), in ApplyResult.get(self, timeout)
    769     return self._value
    770 else:
--> 771     raise self._value

AttributeError: type object 'pide' has no attribute 'ol_water'

[sinanozaydin]

The issues should be resolved in the latest version at the github repo (post-joss branch).