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Haplotype order #33

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JiawenChenn opened this issue Oct 29, 2021 · 1 comment
Open

Haplotype order #33

JiawenChenn opened this issue Oct 29, 2021 · 1 comment

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@JiawenChenn
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Hi,

I have been using RFmix for a while and it works really well. Just a quick question, in the output file, we will have samplename.1 and samplename.2 for haplotypes at one site. How does the result correspond to the original phased vcf file? If we have 0|1, does sample names.1 represents 0 and samplename.2 represents 1?

Thanks a lot for your help!!
@mmcqui
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mmcqui commented Aug 8, 2022

I had the exact same question. Were you ever able to figure this out?

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@JiawenChenn @mmcqui