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Unable to handle the swap of REF/ALT allele? #42

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eldronzhou opened this issue Feb 2, 2023 · 0 comments
Open

Unable to handle the swap of REF/ALT allele? #42

eldronzhou opened this issue Feb 2, 2023 · 0 comments

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@eldronzhou
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Hi,

Does Rfmix2 check and handle the swap of REF/ALT allele between vcfTarget and reference panel? Based on my testing, it seems that Rfmix does not handle this and could lead to incorrect results.
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