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Convert RFMix 2.0 output into RFMIx 1.5. Viterbi output? #45

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MrLocuace opened this issue May 8, 2023 · 1 comment
Open

Convert RFMix 2.0 output into RFMIx 1.5. Viterbi output? #45

MrLocuace opened this issue May 8, 2023 · 1 comment

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@MrLocuace
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Hello,
For an undergoing study, I need to use output RFMix data in Viterbi format. For reasons not worth explaining, I cannot run RFMix1.5 in my server and I am using RFMix2. Is there any way to transform RFMix2 output files to RFMix1.5 output files (Viterbi format)?

@vicbp1
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vicbp1 commented Sep 11, 2023

Hi
You can try with this pipeline, they use rfmix ver2 but generate rfmix ver1 format as part of the asibdne pipeline

https://github.com/hennlab/AS-IBDNe

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