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sample_config.xml
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sample_config.xml
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<?xml version="1.0" encoding="utf-8"?>
<Config xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<ConfigDir>Config</ConfigDir>
<RscriptexePath>REPLACE THIS TEXT WITH PATH TO R EXECUTABLE</RscriptexePath>
<ControllerModel>Set Automatically</ControllerModel>
<GraphLoadingCellsPerFrameStartCount>200</GraphLoadingCellsPerFrameStartCount>
<GraphLoadingCellsPerFrameIncrement>15</GraphLoadingCellsPerFrameIncrement>
<GraphClustersPerFrameStartCount>5</GraphClustersPerFrameStartCount>
<GraphClustersPerFrameIncrement>2</GraphClustersPerFrameIncrement>
<GraphGrabbableCollidersExtensionThresehold>0.05</GraphGrabbableCollidersExtensionThresehold>
<SelectionToolColors>
<Color>
<r>0</r>
<g>0.4028449</g>
<b>1</b>
<a>1</a>
</Color>
<Color>
<r>1</r>
<g>0.628734052</g>
<b>0</b>
<a>1</a>
</Color>
<Color>
<r>0</r>
<g>0.7526316</g>
<b>0.0368421823</b>
<a>1</a>
</Color>
<Color>
<r>0.9681845</r>
<g>0.4934338</g>
<b>0.9973662</b>
<a>1</a>
</Color>
<Color>
<r>0</r>
<g>0.453628838</g>
<b>0.484210521</b>
<a>1</a>
</Color>
<Color>
<r>0.6821781</r>
<g>0.2157895</g>
<b>1</b>
<a>1</a>
</Color>
<Color>
<r>0.6488141</r>
<g>0.8789474</g>
<b>0.235927984</b>
<a>1</a>
</Color>
<Color>
<r>1</r>
<g>0</g>
<b>0</b>
<a>1</a>
</Color>
<Color>
<r>0.060216032</r>
<g>0.276446164</g>
<b>0.76273644</b>
<a>1</a>
</Color>
<Color>
<r>1</r>
<g>0.9947233</g>
<b>0</b>
<a>1</a>
</Color>
<Color>
<r>1</r>
<g>0.100000024</g>
<b>0.670696855</b>
<a>1</a>
</Color>
<Color>
<r>0.2368421</r>
<g>0.616334438</g>
<b>1</b>
<a>1</a>
</Color>
<Color>
<r>0.7552609</r>
<g>0.07155101</g>
<b>0.7282216</b>
<a>1</a>
</Color>
<Color>
<r>0.06936268</r>
<g>0.823681951</g>
<b>0.8204165</b>
<a>1</a>
</Color>
<Color>
<r>1</r>
<g>0.305882335</g>
<b>0.9725491</b>
<a>1</a>
</Color>
<Color>
<r>0.8225353</r>
<g>0.886839867</g>
<b>0.168032825</b>
<a>1</a>
</Color>
<Color>
<r>0.09236795</r>
<g>0.449997753</g>
<b>0.297529757</b>
<a>1</a>
</Color>
<Color>
<r>0.7294118</r>
<g>0.5294118</g>
<b>0.721568644</b>
<a>1</a>
</Color>
<Color>
<r>0.0287804585</r>
<g>0.9175794</g>
<b>0</b>
<a>1</a>
</Color>
<Color>
<r>0.9860005</r>
<g>0.5440002</g>
<b>0</b>
<a>1</a>
</Color>
<Color>
<r>0.47693792</r>
<g>0.9342083</g>
<b>0.932228744</b>
<a>1</a>
</Color>
<Color>
<r>0.4483932</r>
<g>0.5184188</g>
<b>0.0954982042</b>
<a>1</a>
</Color>
<Color>
<r>0.703210235</r>
<g>0.201826751</g>
<b>0.8521574</b>
<a>1</a>
</Color>
<Color>
<r>0.04705882</r>
<g>0</g>
<b>0.4745098</b>
<a>1</a>
</Color>
<Color>
<r>0.523681939</r>
<g>0.523681939</g>
<b>0.523681939</b>
<a>1</a>
</Color>
<Color>
<r>0.478473216</r>
<g>0.12087746</g>
<b>0.408841044</b>
<a>1</a>
</Color>
<Color>
<r>0.570211</r>
<g>0</g>
<b>0</b>
<a>1</a>
</Color>
</SelectionToolColors>
<GraphDefaultColor>
<r>1</r>
<g>1</g>
<b>1</b>
<a>1</a>
</GraphDefaultColor>
<GraphZeroExpressionColor>
<r>0.30347386</r>
<g>0.298682153</g>
<b>0.298682153</b>
<a>1</a>
</GraphZeroExpressionColor>
<GraphNumberOfExpressionColors>30</GraphNumberOfExpressionColors>
<GraphLowExpressionColor>
<r>0</r>
<g>0</g>
<b>1</b>
<a>1</a>
</GraphLowExpressionColor>
<GraphMidExpressionColor>
<r>1</r>
<g>1</g>
<b>0</b>
<a>1</a>
</GraphMidExpressionColor>
<GraphHighExpressionColor>
<r>1</r>
<g>0</g>
<b>0</b>
<a>1</a>
</GraphHighExpressionColor>
<GraphMostExpressedMarker>false</GraphMostExpressedMarker>
<AttributeColors>
<Color>
<r>1</r>
<g>0</g>
<b>0</b>
<a>1</a>
</Color>
<Color>
<r>0</r>
<g>0</g>
<b>1</b>
<a>1</a>
</Color>
<Color>
<r>0</r>
<g>0</g>
<b>1</b>
<a>1</a>
</Color>
</AttributeColors>
<NumberOfHeatmapColors>30</NumberOfHeatmapColors>
<HeatmapLowExpressionColor>
<r>0</r>
<g>0</g>
<b>1</b>
<a>1</a>
</HeatmapLowExpressionColor>
<HeatmapMidExpressionColor>
<r>1</r>
<g>1</g>
<b>0</b>
<a>1</a>
</HeatmapMidExpressionColor>
<HeatmapHighExpressionColor>
<r>1</r>
<g>0</g>
<b>0</b>
<a>1</a>
</HeatmapHighExpressionColor>
<HeatmapHighlightMarkerColor>
<r>1</r>
<g>1</g>
<b>1</b>
<a>1</a>
</HeatmapHighlightMarkerColor>
<HeatmapConfirmMarkerColor>
<r>1</r>
<g>1</g>
<b>0</b>
<a>1</a>
</HeatmapConfirmMarkerColor>
<HeatmapAlgorithm>wilcox</HeatmapAlgorithm>
<NetworkAlgorithm>rho.p</NetworkAlgorithm>
<HeatmapNumberOfGenes>250</HeatmapNumberOfGenes>
<NetworkLineColoringMethod>0</NetworkLineColoringMethod>
<NetworkLineColorPositiveHigh>
<r>1</r>
<g>0</g>
<b>0</b>
<a>1</a>
</NetworkLineColorPositiveHigh>
<NetworkLineColorPositiveLow>
<r>1</r>
<g>1</g>
<b>0</b>
<a>1</a>
</NetworkLineColorPositiveLow>
<NetworkLineColorNegativeLow>
<r>0</r>
<g>1</g>
<b>0</b>
<a>1</a>
</NetworkLineColorNegativeLow>
<NetworkLineColorNegativeHigh>
<r>0</r>
<g>0</g>
<b>1</b>
<a>1</a>
</NetworkLineColorNegativeHigh>
<NumberOfNetworkLineColors>30</NumberOfNetworkLineColors>
<NetworkLineWidth>0.001</NetworkLineWidth>
<VelocityParticlesLowColor>
<r>0</r>
<g>0.0665245056</g>
<b>1</b>
<a>1</a>
</VelocityParticlesLowColor>
<VelocityParticlesHighColor>
<r>1</r>
<g>0</g>
<b>0.000599861145</b>
<a>1</a>
</VelocityParticlesHighColor>
<ConsoleMaxBufferLines>256</ConsoleMaxBufferLines>
<ShowNotifications>false</ShowNotifications>
<GraphPointQuality>Standard</GraphPointQuality>
<GraphPointSize>Standard</GraphPointSize>
<SkyboxTintColor>
<r>0.431578934</r>
<g>0.431578934</g>
<b>0.431578934</b>
<a>1</a>
</SkyboxTintColor>
</Config>