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Changelog.md

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Changelog

All notable changes to this project will be documented in this file.

[1.0.2] - 2020-02-21

Added

  • Changelog file to keep track of changes to this project.

Fixed

  • Fixed bug with outputting to an user-specified output directory.
  • Fixed bug in find_islands_in_pr so that empty island lists do not trigger IndexError.

[1.0.1] - 2019-12-28

Fixed

  • Fixed issue with calling BEDTools using subprocess.call. Instead, use subprocess.Popen to enable piping.
  • Fixed method for getting CPU count

[1.0.0] - 2019-06-14

Added

  • New version of SICER for improved user-friendliness and parallelization support
  • Multiprocessing based on chromosomes
  • RECOGNICER algorithm added
  • Uses BEDTools to convert BAM file to BED automatically