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Plotting TIDK results onto chromosome scaffolds #15

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slimsuite opened this issue Mar 15, 2023 · 1 comment
Open

Plotting TIDK results onto chromosome scaffolds #15

slimsuite opened this issue Mar 15, 2023 · 1 comment

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@slimsuite
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Hi,

Just an FYI rather than an issue. If you are looking for an additional way of plotting TIDK results on an assembly, I have incorporated TIDK output into a tool for plotting chromosome-level assemblies and quickly assessing synteny using BUSCO and possible T2T scaffolds: https://github.com/slimsuite/chromsyn.

An example is in the bioRxiv paper you've picked up as citing TIDK (they're the blue dots): https://www.biorxiv.org/content/10.1101/2022.07.29.502101v1.

ChromSyn plot

Best wishes,

Rich

@Euphrasiologist
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Hi Rich,

Thanks for the comment! I'll leave this issue open, and link your tool in the main README.md. Happy to see it's being used like this!

Cheers,
Max

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