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Just an FYI rather than an issue. If you are looking for an additional way of plotting TIDK results on an assembly, I have incorporated TIDK output into a tool for plotting chromosome-level assemblies and quickly assessing synteny using BUSCO and possible T2T scaffolds: https://github.com/slimsuite/chromsyn.
Hi,
Just an FYI rather than an issue. If you are looking for an additional way of plotting TIDK results on an assembly, I have incorporated TIDK output into a tool for plotting chromosome-level assemblies and quickly assessing synteny using BUSCO and possible T2T scaffolds: https://github.com/slimsuite/chromsyn.
An example is in the bioRxiv paper you've picked up as citing TIDK (they're the blue dots): https://www.biorxiv.org/content/10.1101/2022.07.29.502101v1.
Best wishes,
Rich
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