Repository containing various RNA-seq, ChIP-seq, and 16S-seq analysis pipelines run through R
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Updated
Jul 6, 2021 - R
Repository containing various RNA-seq, ChIP-seq, and 16S-seq analysis pipelines run through R
AU microbiome molecular exploratory analyses for NSW
A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.
A R script for the study of the prokaryotic community of the sponge Dactylospongia metachromia
Code associated with the following manuscript, currently in review: M.S. Fischer, N.J. Patel, P.J. De Lorimier, M.F. Traxler "Prescribed fire selects for a pyrophilous soil subcommunity in a northern California mixed conifer forest"
Python script designed to streamline bioinformatics analysis and facilitate data extraction from EZBioCloud
Quantitative metagenomic alignment and taxonomic exact-matching
A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.
Materials and presentation for the 2022 ISB Microbiome course.
VSEARCH pipeline for ASV inference of 16S seq data
Materials and presentation for the 2023 ISB Microbiome course.
MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.
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