RNA-seq code with Bowtie alignment and generating strain-specific counts using Emase
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Updated
Apr 4, 2022 - HTML
RNA-seq code with Bowtie alignment and generating strain-specific counts using Emase
nextflow ATACseq pipeline for GG02
Bowtie2 v2.5.2 Dockerfile Native for Apple M1+ Silicon (ARM64) and Intel/AMD (x86_64) Containers
Sequencing data preprocessing
This project explores the PBRM1-PIAS1 interaction in epithelial differentiation through ChIP-seq analysis, highlighting EZH2's role and implications for cholesterol biosynthesis in cellular processes.
The repository contain directories of projects done during the bioinformatics degree program
Build Docker container for Bowtie 2 and (optionally) convert to Apptainer/Singularity.
Align reads over a reference genome, filter aligned-reads, and mark duplicates
Snakemake workflow used to call peaks with Macs2
🦠Research project in Bioinformatics Institute 2023-2024
This is a repository for a seminar on Bowtie2 and its use of the Burrows-Wheeler Transform and FM-index in short-read sequence mapping.
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