STAT 540 Spring 2017 team repository
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Updated
Apr 26, 2017 - HTML
STAT 540 Spring 2017 team repository
reports generated by ataqv for Gaulton lab ATAC data
Materials used during #NGSchool2017
snakemake workflow for random forest based feature selection on chromHMM data
The data preprocessing pipeline for the VISION project (for human data)
Epiviz2 Web Application using the component library
The data preprocessing pipeline for the Gtex project (for human data)
The code of article "Large-scale determination and characterization of cell type-specific regulatory elements in the human genome"
PKnorm: a nonlinear model for sequencing depth and signal-to-noise ratio normalization between epigenomic data
ATAC-seq pipeline written in Nextflow
Guide for the Baccarelli Lab GitHub
Find risk snp in the LD region of GWAS snps by convolutional neural network
chromatin accessibility predictions with attention mechanism
Analyses on TCGA data - Part of bachelor thesis studying DNA methylation valleys in breast cancer
Epigenome-wide analysis of DNA methylation from Alzheimer's patients and unaffected controls
Github Page for the Baccarelli Lab
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