Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.
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Updated
Sep 26, 2024 - Python
Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.
Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolution) and how to produce the figures.
Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors
Software for automatic segmentation and generation of standardized clinical reports of brain tumors from MRI volumes
Gene signature analysis of TCGA glioblastoma data
Methods for training and interpreting deep radiogenomic neural networks
Glioblastoma multiforme (GBM) biomarker knowledge base
The work presented explains how to segment the brain tumour area in absence of interaction with user basing his technique on a saliency map constructed from three different resonance techniques.
Reference code for "Improved Prediction of Surgical Resectability in Patients with Glioblastoma using an Artificial Neural Network"
Compares the signals from different regions of interest (ROIs) to determine which ROIs belong to the same cell. Used for glioblastoma images.
Statistical testing for GBM Margin/ Primary tumours
Glioblastoma tumour classfication and tumour grade segmentattion using U-NET CNN
A fast C++ based implementation of the CA-PPMx by Chandra et al. (2023+).
This repository contains the code for my MSc project titled "Investigating therapy-driven changes in isoform expression in glioblastoma"
Accurate Early Detection of GBM Brain Cancer With Deep Learning (AI) - Silver Medal Finalist at GVRSF 2019
Automating exosome-based glioblastoma diagnosis through bioinformatics and machine learning
Image process framework to easily analyse fluorescent glioblastoma cells in pattern of neurons.
This repository contains primary source code for "Transcriptomic portraits and molecular pathway activation features of spinal intramedullary astrocytomas" manuscript.
https://doi.org/10.5281/zenodo.6941367 - Spatiotemporal-Aware Glioblastoma Multiforme Tumor Growth Modeling with Deep Encoder-Decoder Networks
Source code for "Overexpression of CRNDE in glioblastoma is a poor survival prognosis biomarker" paper
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