aPhyloGeo is a multiplatform application for the analysis of genetic and climatic conditions.
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Updated
Oct 4, 2024 - Shell
aPhyloGeo is a multiplatform application for the analysis of genetic and climatic conditions.
Ancestral character reconstruction and visualisation for rooted phylogenetic trees
A tool for the spatial analysis of diversity
R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.
Genomic Epidemiology of SARS-CoV-2 in Pakistan
Spread visualizes how viruses and other pathogens are spreading in time and space. It creates compellable shareable, interactive and time-animated visualization.
Phylogeographic workflow using sliding-windows, RAxML-NG and FastTree
Supporting code for a study on the phylogeography of the common garter snake Thamnophis sirtalis
Scripts in R for analyses of Isolation by Resistance (IBR) - PART 3 in LANDSCAPE GENOMICS PIPELINE
LineageHomology uses phylogenies with reconstructed ancestral states to define groups of phylogenetic tips that have gained their states through homologous inheritance or de novo acquisition. LineageHomology can be applied to pathogen phylogeography to define transmission lineages and singletons and derive simple estimates of importation and loc…
Scripts in R for analyses of Isolation by Distance (IBD) - PART 2 in LANDSCAPE GENOMICS PIPELINE
Scripts in R for Landscape Genomics Analyses v.2
Nextstrain community build 'Molecular epidemiology of Venezuelan equine encephalitis complex viruses'
Nextstrain community build 'Molecular epidemiology of Chikungunya virus'
Tracking the spread of Foot-and-Mouth Disease virus in South America
Genomic epidemiology of novel coronavirus (SARS-CoV-2) in Pakistan
Welcome to the StrainHub Repo - Files and Data - StrainHub Online:
Phylogeographical analyses of SARS-CoV-2 variants of concern in Norway
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