From 8f52a498b1d8019a86ea617d343fd21a85a7049a Mon Sep 17 00:00:00 2001 From: cat-bro Date: Mon, 16 Sep 2024 20:10:31 +1000 Subject: [PATCH] singularity for requested tools --- .../production/total_perspective_vortex/tools.yml | 9 +++++++++ 1 file changed, 9 insertions(+) diff --git a/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml b/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml index a494d6a4f..7c23e794f 100644 --- a/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml +++ b/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml @@ -1261,6 +1261,9 @@ tools: toolshed.g2.bx.psu.edu/repos/iuc/arriba_get_filters/arriba_get_filters/.*: params: singularity_enabled: true + toolshed.g2.bx.psu.edu/repos/iuc/artic.*: + params: + singularity_enabled: true toolshed.g2.bx.psu.edu/repos/iuc/bakta/bakta/.*: context: max_concurrent_job_count_for_tool_user: 2 @@ -2600,6 +2603,9 @@ tools: toolshed.g2.bx.psu.edu/repos/iuc/sceasy_convert/sceasy_convert/.*: params: singularity_enabled: true + toolshed.g2.bx.psu.edu/repos/iuc/seq2hla/seq2hla/.*: + params: + singularity_enabled: true toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_.*: params: singularity_enabled: true @@ -3561,6 +3567,9 @@ tools: mem: 11.5 params: singularity_enabled: true + toolshed.g2.bx.psu.edu/repos/iuc/optitype/optitype/.*: + params: + singularity_enabled: true toolshed.g2.bx.psu.edu/repos/iuc/orthofinder_onlygroups/orthofinder_onlygroups/.*: context: max_concurrent_job_count_for_tool_user: 2