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--fasta search - this is the typo, should be --fasta-search. |
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I am currently trying to switch from Windows to a Linux-based server as the amount of data is getting out of hand. While trying to set up the commandline i ran into the following error:
ERROR: src/diann.cpp: 19102: Cannot load FASTA
The Fasta-File is identical to the one I used on Windows and I have checked everything regarding permissions. At the moment, I am completely out of ideas and would appreciate any kind of input. For better comparison I have provided my commandline code below:
./diann-1.8.1 --dir /home/ubuntu/Omics/Data/mzml --lib "" --threads 8 --verbose 1 --out /home/ubuntu/Omics/DIA-NN/benchmark --qvalue 0.01 --out-lib /home/ubuntu/Omics/DIA-NN/benchmark --gen-spec-lib --predictor --fasta /home/ubuntu/Omics/Data/REF_EColi_K12_UPS1_combined.fasta --fasta search --min-fr-mz 50 --max-fr-mz 1500 --met-excision --cut K*,R* --missed-cleavages 2 --min-pep-len 7 --max-pep-len 30 --min-pr-mz 350 --max-pr-mz 950 --min-pr-charge 1 --max-pr-charge 4 --unimod4 --var-mods 3 --reanalyse --relaxed-prot-inf --smart-profiling --fasta-search
Best regards
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