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Genes.MaxLFQ.Unique is this quantity. Also, you can always perform MaxLFQ quant in R yourself using the diann R package or the iq R package, and whatever peptides you'd like to use for this |
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Yes, the unique genes matrix is also based on unique peptides only |
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Is it possible to make DIA-NN quantify based on unique peptides only? or is this already given by the unique gene matrix in output?
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