add extra columns to the pg-report or gg-report

[DaliJarboui]

Hi,
is there any way to add some extra columns to the report-pg, or -gg matrix, such as the number of peptides (or unique peptides, from each experiment used for quantification).
thanks for your help.

[vdemichev]

All peptides annotated to a protein group in the main report with run-specific q-value < 1% are used to quantify this protein group. Only unique peptides are used to calculate Genes.MaxLFQ.Unique.

[diabeginner01]

Isn't it top 3 peptides/precursors that are used for quantification of the protein group?

[vdemichev]

No, it's MaxLFQ now

[DaliJarboui]

What I mean is an extra output column in the report files for pg or gg where we can see the number of peptides used for the quantification (gene1: N unique peptides in file 1/ file 2 etc....).
the report.pg (or gg).tsv contains only MaxLFQ values without information on the number of unique peptides used for the quantification.

[vdemichev]

Yes, I agree this would be helpful. Not sure when will be implemented though. As is, can easily get this info with a simple R or Python script though.