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[BUG] Unknown configuration profile: 'single_sample_decontx_scrublet' #381

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s-aibar opened this issue Jun 7, 2022 · 0 comments
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s-aibar commented Jun 7, 2022

In the documentation, there is a pipeline called single_sample_decontx_scrublet, but when I try to create the config, it throws the error:
Unknown configuration profile: 'single_sample_decontx_scrublet'

It seems that the ones that actually exist (in nextflow.config) are single_sample_decontx_correct, single_sample_decontx_filter_scrublet and single_sample_decontx_correct_scrublet (and they work for creating the config file… )

(Btw, I don't see the explanation of the difference between decontx_correct and decontx_filter either)


  • OS: VSC
  • Nextflow Version: 21.04.3 build 5563
  • vsn-pipelines Version: v0.27.0
@s-aibar s-aibar added the bug Something isn't working label Jun 7, 2022
@s-aibar s-aibar changed the title [BUG] [BUG] Unknown configuration profile: 'single_sample_decontx_scrublet' Jun 7, 2022
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