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Vignette building failed #4

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biodavidjm opened this issue Nov 13, 2019 · 0 comments
Open

Vignette building failed #4

biodavidjm opened this issue Nov 13, 2019 · 0 comments

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@biodavidjm
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Building the docker command throws this error:

   SUMMARY: processing the following file failed:
     ‘tmt_pipeline_v1_PNNL_DMS.Rmd’

   Error: Vignette re-building failed.
   Execution halted
Error: Failed to install 'PlexedPiper' from GitHub:
  System command error, exit status: 1, stdout + stderr (last 10 lines):
E>   QuantBlock = col_double(),
E>   Reference = col_character()
E> )
E> --- finished re-building ‘tmt_pipeline_v1.Rmd’
E>
E> SUMMARY: processing the following file failed:
E>   ‘tmt_pipeline_v1_PNNL_DMS.Rmd’
E>
E> Error: Vignette re-building failed.
E> Execution halted
Execution halted
The command '/bin/sh -c R -e 'remotes::install_github("vladpetyuk/PlexedPiper", build_vignettes = TRUE)'' returned a non-zero code: 1
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