Buffer overflow detected when creating the packed cigar string

[ChaseRushton]

I'm using the latest version(2.2.3)

Hashing the reference sequence works fine, but when it tries to align I get

Aligning read library (12497018):
0% [ ] |
ERROR: buffer overflow detected when creating the packed cigar string.

This is my script ( been messing around with CPU's/ram and no success)

module load module load mosaik/2.2.30
ANN_PATH=/tools/mosaik-2.2.30/src/networkFile
ref=rheMac3.masked.dat
in=SRR066258.tier2.queryorder.mkb
out=SRR066258.tier2.queryorder.mka
path=/tools/mosaik-2.2.30/bin/
wd=/home/car0019/mosaik/
${path}MosaikAligner -in ${wd}${in} -out ${wd}${out} -ia ${wd}${ref} -annpe $ANN_PATH/2.1.78.pe.ann -annse $ANN_PATH/2.1.78.se.ann

Does anyone have any ideas to get past this error? I tried tinkering around and couldn't get it.

Cheers!

[linolala]

Not sure if you're still fighting the same problem.
It's actually an issue with the latest Mosaik version and has been addressed earlier:

Reverting to v.2.2.26 seems to solve the problem:
git checkout e04c806; cd src; make clean; make
whereafter the demo works ok.

[ycl6]

@linolala So, should we use v2.2.30 or v2.2.26?

[linolala]

I'm not sure whether the problem has been fixed in version v2.2.30 yet. For me it worked after using the mentioned commands.
#11

[ycl6]

@linolala
Thanks, I follow the command and no error given when running demo