-
Notifications
You must be signed in to change notification settings - Fork 1
/
NAMESPACE
88 lines (87 loc) · 2.04 KB
/
NAMESPACE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
# Generated by roxygen2: do not edit by hand
S3method("$",mergedCytoSignal)
S3method("$<-",mergedCytoSignal)
S3method("names<-",mergedCytoSignal)
S3method(.DollarNames,mergedCytoSignal)
S3method(changeUniprot,CytoSignal)
S3method(changeUniprot,matrix_like)
S3method(dim,mergedCytoSignal)
S3method(findNNDT,CytoSignal)
S3method(findNNDT,matrix)
S3method(findNNGauEB,CytoSignal)
S3method(findNNGauEB,matrix)
S3method(format,CytosignalIntrDEG)
S3method(graphNicheLR,CytoSignal)
S3method(graphNicheLR,dgCMatrix)
S3method(imputeNiche,CytoSignal)
S3method(imputeNiche,dgCMatrix)
S3method(imputeNicheVelo,CytoSignal)
S3method(names,mergedCytoSignal)
S3method(print,CytosignalIntrDEG)
S3method(print,plist)
S3method(showIntr,CytoSignal)
S3method(showIntr,mergedCytoSignal)
export(addIntrDB)
export(addVelo)
export(changeUniprot)
export(createCytoSignal)
export(findNN)
export(findNNDT)
export(findNNGauEB)
export(findNNRaw)
export(graphNicheLR)
export(heatmap_GO)
export(hex_bin)
export(hex_coord)
export(hex_pos)
export(imputeLR)
export(imputeNiche)
export(imputeNicheVelo)
export(imputeVeloLR)
export(inferCorrScore)
export(inferEpsParams)
export(inferIntrDEG)
export(inferIntrScore)
export(inferIntrVelo)
export(inferNullScoreLR)
export(inferScoreLR)
export(inferSignif)
export(inferVeloLR)
export(mergeCytoSignal)
export(permuteLR)
export(plotCluster)
export(plotEdge)
export(plotIntrValue)
export(plotNebulaAll)
export(plotNebulaVolcano)
export(plotREVIGO)
export(plotSigCluster)
export(plotSignif)
export(plotSignif2)
export(plotVelo)
export(purgeBeforeSave)
export(rankIntrSpatialVar)
export(removeLowQuality)
export(revigo)
export(runNEBULA)
export(runPears.std)
export(showCov)
export(showImp)
export(showIntr)
export(showLog)
export(showScore)
export(showUnpt)
export(showVelo)
export(suggestScaleFactor)
exportClasses(CytoSignal)
exportClasses(ImpData)
exportClasses(lrScores)
exportClasses(lrVelo)
exportMethods(show)
importFrom(Matrix,colSums)
importFrom(Matrix,rowSums)
importFrom(Matrix,t)
importFrom(Rcpp,evalCpp)
importFrom(plyr,count)
importFrom(rlang,.data)
useDynLib(cytosignal)