This repository contains the manuscript entitled: Recommendations to package and containerize bioinformatics software. Our aim here is to describe how the bioinformatics community can produce better software containers and package to improve reducibility of original results.
- Pre-print: Pending
- Final Paper: Pending
Feel free to comment, fork and pull-request the current version of the manuscript. If you want to discuss issues or topics around the manuscript please feel free to use the issues and/or pull requests.
Feel free to browse through existing/past issues and if one seems related, comment on it. If no existing issue seems appropriate, a new issue can be opened to discuss the suggestion. In particular, we would appreciate discussing more substantial changes (for example suggestion of new rules) in a dedicated issue before sending a pull request.
If you are new to Git, read the manuscript or Quick Guidelines to Git and GitHub - your input would be most valuable.
If, based on your contribution, you would like to be added as a co-author, please open an issue and provide your name and affiliation and a short description of your contribution or a link to the relevant issue and pull request.
- Any modifications to the text should be made to the
manuscript.adocfile. This file is then converted to pdf and doc files automatically usingpandocand included in the main tex file.
Please be sure you have installed Docker. Then you can run the following command:
bash build.sh
A folder manuscript-draft would be created.
The authors have no affiliation with Docker or Conda, nor any commercial entity mentioned in this article. The views described here reflect our own views without input from any third party organisation.