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Merge pull request #66 from 4dn-dcic/ffmeta_for_qc
Ffmeta for qc
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Original file line number | Diff line number | Diff line change |
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{ | ||
"ff_meta": { | ||
"run_platform": "AWSEM", | ||
"uuid": "18564368-1299-4ce0-82d1-c8917450d834", | ||
"parameters": [], | ||
"workflow": "2324ad76-ff37-4157-8bcc-3ce72b7dace9", | ||
"title": "fastqc-0-11-4-1 hahaha run 2018-01-16 23:08:21.335210", | ||
"award": "1U01CA200059-01", | ||
"awsem_job_id": "", | ||
"run_url": "https://console.aws.amazon.com/states/home?region=us-east-1#/executions/details/arn:aws:states:us-east-1:643366669028:execution:run_awsem_new_pony-dev:fastqc_613a0edc-f130-49a0-b97c-b812a6a42d84", | ||
"awsem_app_name": "fastqc-0-11-4-1", | ||
"lab": "4dn-dcic-lab", | ||
"run_status": "started", | ||
"output_files": [ | ||
{ | ||
"type": "Output QC file", | ||
"workflow_argument_name": "report_zip" | ||
} | ||
], | ||
"input_files": [ | ||
{ | ||
"ordinal": 1, | ||
"workflow_argument_name": "input_fastq", | ||
"value": "f4864029-a8ad-4bb8-93e7-5108f462ccaa" | ||
} | ||
] | ||
}, | ||
"instance_ip": "54.164.70.164", | ||
"app_name": "fastqc-0-11-4-1", | ||
"_tibanna": { | ||
"env": "fourfront-webdev", | ||
"settings": { | ||
"url": "https://console.aws.amazon.com/states/home?region=us-east-1#/executions/details/arn:aws:states:us-east-1:643366669028:execution:run_awsem_new_pony-dev:fastqc_613a0edc-f130-49a0-b97c-b812a6a42d84", | ||
"run_type": "fastqc", | ||
"run_id": "613a0edc-f130-49a0-b97c-b812a6a42d84", | ||
"env": "fourfront-webdev", | ||
"run_name": "fastqc_613a0edc-f130-49a0-b97c-b812a6a42d84" | ||
} | ||
}, | ||
"start_time": "20180116-23:08:29-UTC", | ||
"args": { | ||
"secondary_output_target": {}, | ||
"app_name": "fastqc-0-11-4-1", | ||
"input_parameters": {}, | ||
"cwl_child_filenames": [ | ||
"fastqc-0-11-4.cwl" | ||
], | ||
"output_target": { | ||
"report_zip": "18564368-1299-4ce0-82d1-c8917450d834/report_zip" | ||
}, | ||
"cwl_main_filename": "fastqc-0-11-4-1.cwl", | ||
"secondary_files": {}, | ||
"output_S3_bucket": "elasticbeanstalk-fourfront-webdev-wfoutput", | ||
"app_version": "0.2.0", | ||
"cwl_directory_url": "https://raw.githubusercontent.com/4dn-dcic/pipelines-cwl/0.2.0/cwl_awsem/", | ||
"input_files": { | ||
"input_fastq": { | ||
"bucket_name": "elasticbeanstalk-fourfront-webdev-files", | ||
"object_key": "f4864029-a8ad-4bb8-93e7-5108f462ccaa/4DNFIRSRJH45.fastq.gz" | ||
} | ||
} | ||
}, | ||
"output_bucket": "elasticbeanstalk-fourfront-webdev-wfoutput", | ||
"jobid": "eUJZ9nH7Rsz2", | ||
"instance_id": "i-04df1c1ca7a06ef66", | ||
"tag": "hahaha", | ||
"pf_meta": [], | ||
"parameters": {}, | ||
"config": { | ||
"ebs_size": 10, | ||
"password": "", | ||
"ebs_type": "io1", | ||
"json_bucket": "4dn-aws-pipeline-run-json", | ||
"json_dir": "/tmp/json", | ||
"EBS_optimized": false, | ||
"ebs_iops": 500, | ||
"userdata_dir": "/tmp/userdata", | ||
"shutdown_min": "300", | ||
"instance_type": "t2.micro", | ||
"s3_access_arn": "arn:aws:iam::643366669028:instance-profile/S3_access", | ||
"job_tag": "fastqc-0-11-4-1", | ||
"copy_to_s3": true, | ||
"script_url": "https://raw.githubusercontent.com/4dn-dcic/tibanna/master/awsf/", | ||
"key_name": "4dn-encode", | ||
"launch_instance": true, | ||
"ami_id": "ami-cfb14bb5", | ||
"log_bucket": "tibanna-output" | ||
}, | ||
"workflow_uuid": "2324ad76-ff37-4157-8bcc-3ce72b7dace9", | ||
"input_files": [ | ||
{ | ||
"workflow_argument_name": "input_fastq", | ||
"bucket_name": "elasticbeanstalk-fourfront-webdev-files", | ||
"uuid": "f4864029-a8ad-4bb8-93e7-5108f462ccaa", | ||
"object_key": "4DNFIRSRJH45.fastq.gz" | ||
} | ||
] | ||
} |
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Original file line number | Diff line number | Diff line change |
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@@ -0,0 +1,130 @@ | ||
{ | ||
"ff_meta": { | ||
"run_platform": "AWSEM", | ||
"uuid": "3d71f45f-6a77-47b4-9839-eb02204c6dae", | ||
"parameters": [ | ||
{ | ||
"workflow_argument_name": "enzyme", | ||
"value": "6" | ||
}, | ||
{ | ||
"workflow_argument_name": "sample_name", | ||
"value": "4DNFI1ZLO9D7" | ||
} | ||
], | ||
"workflow": "ae3a87cb-3fa2-469e-97c7-540fc2d0a117", | ||
"title": "pairsqc-single run 2018-01-16 23:08:25.250148", | ||
"award": "1U01CA200059-01", | ||
"awsem_job_id": "", | ||
"run_url": "https://console.aws.amazon.com/states/home?region=us-east-1#/executions/details/arn:aws:states:us-east-1:643366669028:execution:run_awsem_new_pony-dev:pairsqc-single_649e1149-68b5-43b3-bc92-65ca077dc983", | ||
"awsem_app_name": "pairsqc-single", | ||
"lab": "4dn-dcic-lab", | ||
"run_status": "started", | ||
"output_files": [ | ||
{ | ||
"type": "Output QC file", | ||
"workflow_argument_name": "report" | ||
} | ||
], | ||
"input_files": [ | ||
{ | ||
"ordinal": 1, | ||
"workflow_argument_name": "input_pairs", | ||
"value": "817f3faa-0573-45c0-8230-02ec19de6544" | ||
}, | ||
{ | ||
"ordinal": 1, | ||
"workflow_argument_name": "chromsizes", | ||
"value": "4a6d10ee-2edb-4402-a98f-0edb1d58f5e9" | ||
} | ||
] | ||
}, | ||
"instance_ip": "52.87.161.131", | ||
"app_name": "pairsqc-single", | ||
"_tibanna": { | ||
"env": "fourfront-webdev", | ||
"settings": { | ||
"url": "https://console.aws.amazon.com/states/home?region=us-east-1#/executions/details/arn:aws:states:us-east-1:643366669028:execution:run_awsem_new_pony-dev:pairsqc-single_649e1149-68b5-43b3-bc92-65ca077dc983", | ||
"run_type": "pairsqc-single", | ||
"run_id": "649e1149-68b5-43b3-bc92-65ca077dc983", | ||
"env": "fourfront-webdev", | ||
"run_name": "pairsqc-single_649e1149-68b5-43b3-bc92-65ca077dc983" | ||
} | ||
}, | ||
"start_time": "20180116-23:08:32-UTC", | ||
"args": { | ||
"secondary_output_target": {}, | ||
"app_name": "pairsqc-single", | ||
"input_parameters": { | ||
"enzyme": "6", | ||
"sample_name": "4DNFI1ZLO9D7" | ||
}, | ||
"cwl_child_filenames": [], | ||
"output_target": { | ||
"report": "3d71f45f-6a77-47b4-9839-eb02204c6dae/report" | ||
}, | ||
"cwl_main_filename": "pairsqc-single.cwl", | ||
"secondary_files": { | ||
"input_pairs": { | ||
"bucket_name": "elasticbeanstalk-fourfront-webdev-wfoutput", | ||
"object_key": "817f3faa-0573-45c0-8230-02ec19de6544/4DNFI1ZLO9D7.pairs.gz.px2" | ||
} | ||
}, | ||
"output_S3_bucket": "elasticbeanstalk-fourfront-webdev-wfoutput", | ||
"app_version": "dev", | ||
"cwl_directory_url": "https://raw.githubusercontent.com/4dn-dcic/pipelines-cwl/dev/cwl_awsem/", | ||
"input_files": { | ||
"chromsizes": { | ||
"bucket_name": "elasticbeanstalk-fourfront-webdev-files", | ||
"object_key": "4a6d10ee-2edb-4402-a98f-0edb1d58f5e9/4DNFI823LSII.chrom.sizes" | ||
}, | ||
"input_pairs": { | ||
"bucket_name": "elasticbeanstalk-fourfront-webdev-wfoutput", | ||
"object_key": "817f3faa-0573-45c0-8230-02ec19de6544/4DNFI1ZLO9D7.pairs.gz" | ||
} | ||
} | ||
}, | ||
"output_bucket": "elasticbeanstalk-fourfront-webdev-wfoutput", | ||
"jobid": "11Jz5nf2xJGt", | ||
"instance_id": "i-0901c30deadd480e4", | ||
"pf_meta": [], | ||
"parameters": { | ||
"enzyme": "6", | ||
"sample_name": "4DNFI1ZLO9D7" | ||
}, | ||
"config": { | ||
"ebs_size": 13, | ||
"password": "dragonfly", | ||
"ebs_type": "io1", | ||
"json_bucket": "4dn-aws-pipeline-run-json", | ||
"json_dir": "/tmp/json", | ||
"EBS_optimized": false, | ||
"ebs_iops": 500, | ||
"userdata_dir": "/tmp/userdata", | ||
"shutdown_min": 120, | ||
"instance_type": "t2.micro", | ||
"s3_access_arn": "arn:aws:iam::643366669028:instance-profile/S3_access", | ||
"job_tag": "pairsqc-single", | ||
"copy_to_s3": true, | ||
"script_url": "https://raw.githubusercontent.com/4dn-dcic/tibanna/master/awsf/", | ||
"key_name": "4dn-encode", | ||
"launch_instance": true, | ||
"ami_id": "ami-cfb14bb5", | ||
"log_bucket": "tibanna-output" | ||
}, | ||
"workflow_uuid": "ae3a87cb-3fa2-469e-97c7-540fc2d0a117", | ||
"input_files": [ | ||
{ | ||
"workflow_argument_name": "input_pairs", | ||
"bucket_name": "elasticbeanstalk-fourfront-webdev-wfoutput", | ||
"uuid": "817f3faa-0573-45c0-8230-02ec19de6544", | ||
"object_key": "4DNFI1ZLO9D7.pairs.gz" | ||
}, | ||
{ | ||
"object_key": "4DNFI823LSII.chrom.sizes", | ||
"bucket_name": "elasticbeanstalk-fourfront-webdev-files", | ||
"workflow_argument_name": "chromsizes", | ||
"uuid": "4a6d10ee-2edb-4402-a98f-0edb1d58f5e9" | ||
} | ||
] | ||
} |
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