fixed snakemake_main_filename issue

4dn-dcic · Mar 31, 2021 · 9502201 · 9502201
1 parent c2561ee
commit 9502201
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/tibanna/_version.py b/tibanna/_version.py
@@ -1,4 +1,4 @@
 """Version information."""
 
 # The following line *must* be the last in the module, exactly as formatted:
-__version__ = "1.1.3"
+__version__ = "1.2.0"
diff --git a/tibanna/ec2_utils.py b/tibanna/ec2_utils.py
@@ -79,6 +79,7 @@ def auto_fill(self):
         """
         args = self.args
         cfg = self.cfg
+        args.fill_default()
         cfg.fill_language_options(args.language, getattr(args, 'singularity', False))
         cfg.fill_other_fields(args.app_name)
         # sanity check
@@ -118,8 +119,8 @@ def __init__(self, fill_default=True, **kwargs):
         for field in ['output_S3_bucket']:
             if not hasattr(self, field):
                 raise MissingFieldInInputJsonException("field %s is required in args" % field)
-        if fill_default:
-            self.fill_default()
+        #if fill_default:
+        #    self.fill_default()
 
     def update(self, d):
         for k, v in d.items():