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Need to specify axes using imsave
Example with skimage: skimage.io.imsave(resultLocation, outputData, None, {'axes':'XYZ'})
Example with tifffile: tifffile.imsave(f"{outpath}/my_TZCYX_data.tif", data, metadata={'axes': 'TZCYX'})
Do we need to say which axes are present for each case, or can we always use the TZYX format even if those aren't present?
The text was updated successfully, but these errors were encountered:
Fixes 2D+T handling
fff7b4a
Now updated to handle 2D+T correctly using 'axes' metadata parameter of tifffile.imwrite #12
Need to test in:
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cb08505
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Need to specify axes using imsave
Example with skimage:
skimage.io.imsave(resultLocation, outputData, None, {'axes':'XYZ'})
Example with tifffile:
tifffile.imsave(f"{outpath}/my_TZCYX_data.tif", data, metadata={'axes': 'TZCYX'})
Do we need to say which axes are present for each case, or can we always use the TZYX format even if those aren't present?
The text was updated successfully, but these errors were encountered: