gladstonePublications

usage:

php makePubTable.php

prerequisites:

• curl
• on ubuntu:

  sudo apt-get install curl libcurl3 libcurl3-dev php5-curl

  then

  sudo apache2ct restart

key files:

• makePubTable.php - main script; takes results from other scripts and composes final CSV
• bioXML2pubmedXML.php - takes bio.xml, queries pubmed by name and Profiles by id, returns XML of pubmed ids
• wosQuery.php - takes XML of pubmed ids, queries isinet (thomson routers) for structured data, returns CSV table
• bio.xml - query set of investigator names and profile ids
• out - dir where CSV output is written