base.yml

name: base
channels:
  - bioconda
  - anaconda
  - r
  - conda-forge
  - defaults
dependencies:
  - _libgcc_mutex=0.1=main
  - asn1crypto=0.24.0=py37_0
  - ca-certificates=2020.4.5.1=hecc5488_0
  - certifi=2020.4.5.1=py37hc8dfbb8_0
  - cffi=1.12.2=py37h2e261b9_1
  - chardet=3.0.4=py37_1
  - conda=4.8.3=py37hc8dfbb8_1
  - conda-package-handling=1.6.0=py37h7b6447c_0
  - cryptography=2.6.1=py37h1ba5d50_0
  - fastp=0.20.1=h8b12597_0
  - idna=2.8=py37_0
  - libedit=3.1.20181209=hc058e9b_0
  - libffi=3.2.1=hd88cf55_4
  - libgcc-ng=8.2.0=hdf63c60_1
  - libstdcxx-ng=8.2.0=hdf63c60_1
  - ncurses=6.1=he6710b0_1
  - openssl=1.1.1f=h516909a_0
  - pip=19.0.3=py37_0
  - pycosat=0.6.3=py37h14c3975_0
  - pycparser=2.19=py37_0
  - pyopenssl=19.0.0=py37_0
  - pysocks=1.6.8=py37_0
  - python=3.7.3=h0371630_0
  - python_abi=3.7=1_cp37m
  - readline=7.0=h7b6447c_5
  - requests=2.21.0=py37_0
  - ruamel_yaml=0.15.46=py37h14c3975_0
  - setuptools=41.0.0=py37_0
  - six=1.12.0=py37_0
  - sqlite=3.27.2=h7b6447c_0
  - tk=8.6.8=hbc83047_0
  - tqdm=4.43.0=py_0
  - urllib3=1.24.1=py37_0
  - wheel=0.33.1=py37_0
  - xz=5.2.4=h14c3975_4
  - yaml=0.1.7=had09818_2
  - zlib=1.2.11=h7b6447c_3
  - pip:
    - bcbio-gff==0.6.6
    - biopython==1.74
    - chewbbaca==2.0.17.2
    - et-xmlfile==1.0.1
    - isodate==0.6.0
    - jdcal==1.4.1
    - numpy==1.17.0
    - openpyxl==2.6.3
    - pandas==0.25.0
    - plotly==4.2.1
    - progressbar==2.5
    - pyparsing==2.4.5
    - python-dateutil==2.8.0
    - pytz==2019.2
    - rdflib==4.2.2
    - retrying==1.3.3
    - scipy==1.3.2
    - sparqlwrapper==1.8.4
prefix: /processing_Data/bioinformatics/pipelines/miniconda3