mtbseq.yml

name: mtbseq
channels:
  - conda-forge
  - bioconda
  - defaults
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=1_gnu
  - bwa=0.7.17=h5bf99c6_8
  - bzip2=1.0.8=h7f98852_4
  - c-ares=1.18.1=h7f98852_0
  - ca-certificates=2021.10.8=ha878542_0
  - certifi=2016.9.26=py36_0
  - curl=7.80.0=h2574ce0_0
  - gatk=3.8=py36_0
  - krb5=1.19.2=hcc1bbae_3
  - ld_impl_linux-64=2.36.1=hea4e1c9_2
  - libcurl=7.80.0=h2574ce0_0
  - libedit=3.1.20191231=he28a2e2_2
  - libev=4.33=h516909a_1
  - libffi=3.4.2=h7f98852_5
  - libgcc-ng=11.2.0=h1d223b6_11
  - libgomp=11.2.0=h1d223b6_11
  - libnghttp2=1.43.0=h812cca2_1
  - libssh2=1.10.0=ha56f1ee_2
  - libstdcxx-ng=11.2.0=he4da1e4_11
  - libzlib=1.2.11=h36c2ea0_1013
  - mtbseq=1.0.4=hdfd78af_2
  - ncurses=6.2=h58526e2_4
  - openjdk=8.0.312=h7f98852_0
  - openssl=1.1.1l=h7f98852_0
  - perl=5.26.2=h36c2ea0_1008
  - perl-base=2.23=pl526_1
  - perl-carp=1.38=pl526_3
  - perl-constant=1.33=pl526_1
  - perl-exporter=5.72=pl526_1
  - perl-extutils-makemaker=7.36=pl526_1
  - perl-file-path=2.16=pl526_0
  - perl-getopt-long=2.50=pl526_1
  - perl-mce=1.837=pl526_0
  - perl-number-format=1.75=pl526_3
  - perl-scalar-list-utils=1.52=pl526h516909a_0
  - perl-socket=2.027=pl526_1
  - perl-statistics-basic=1.6611=pl526_2
  - perl-storable=3.15=pl526h14c3975_0
  - perl-time-hires=1.9760=pl526h14c3975_1
  - perl-xsloader=0.24=pl526_0
  - picard=2.18.29=0
  - pip=21.3.1=pyhd8ed1ab_0
  - python=3.6.13=hb7a2778_2_cpython
  - python_abi=3.6=2_cp36m
  - readline=8.1=h46c0cb4_0
  - samtools=1.6=hb116620_7
  - setuptools=49.6.0=py36h5fab9bb_3
  - sqlite=3.37.0=h9cd32fc_0
  - tk=8.6.11=h27826a3_1
  - wheel=0.37.0=pyhd8ed1ab_1
  - xz=5.2.5=h516909a_1
  - zlib=1.2.11=h36c2ea0_1013