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virus_illumina_sispa.yml
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virus_illumina_sispa.yml
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name: virus_illumina_sispa
channels:
- bioconda
- hcc
- anaconda
- r
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=0_gnu
- _r-mutex=1.0.1=anacondar_1
- abacas=1.3.1=0
- alsa-lib=1.1.5=h516909a_1002
- artemis=18.1.0=0
- bcftools=1.8=h4da6232_3
- bedtools=2.26.0=0
- binutils_impl_linux-64=2.33.1=h53a641e_8
- binutils_linux-64=2.33.1=h9595d00_17
- blast=2.9.0=pl526h3066fca_4
- bowtie2=2.3.5.1=py36he513fc3_0
- bwa=0.7.17=hed695b0_7
- bwidget=1.9.14=0
- bzip2=1.0.8=h516909a_2
- ca-certificates=2019.11.28=hecc5488_0
- cairo=1.16.0=hfb77d84_1002
- certifi=2019.11.28=py36h9f0ad1d_1
- cffi=1.14.0=py36hd463f26_0
- chardet=3.0.4=py36h9f0ad1d_1006
- circos=0.69.8=0
- click=7.1.1=pyh8c360ce_0
- coloredlogs=14.0=py36_0
- colormath=3.0.0=py_2
- cryptography=2.8=py36h72c5cf5_1
- curl=7.68.0=hf8cf82a_0
- cycler=0.10.0=py_2
- dbus=1.13.6=he372182_0
- decorator=4.4.2=py_0
- entrez-direct=13.3=pl526h375a9b1_0
- expat=2.2.9=he1b5a44_2
- fastqc=0.11.9=0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- fontconfig=2.13.1=h86ecdb6_1001
- freebayes=1.3.2=py36hc088bd4_0
- freetype=2.10.0=he983fc9_1
- fribidi=1.0.5=h516909a_1002
- future=0.18.2=py36h9f0ad1d_1
- gcc_impl_linux-64=7.3.0=hd420e75_5
- gcc_linux-64=7.3.0=h553295d_17
- gettext=0.19.8.1=hc5be6a0_1002
- gfortran_impl_linux-64=7.3.0=hdf63c60_5
- gfortran_linux-64=7.3.0=h553295d_17
- giflib=5.2.1=h516909a_2
- glib=2.58.3=py36hd3ed26a_1003
- glimmerhmm=3.0.4=pl526hf484d3e_3
- graphite2=1.3.13=hf484d3e_1000
- gsl=2.6=h294904e_0
- gst-plugins-base=1.14.5=h0935bb2_2
- gstreamer=1.14.5=h36ae1b5_2
- gxx_impl_linux-64=7.3.0=hdf63c60_5
- gxx_linux-64=7.3.0=h553295d_17
- harfbuzz=2.4.0=h9f30f68_3
- htslib=1.9=h4da6232_3
- humanfriendly=8.1=py36_0
- icu=64.2=he1b5a44_1
- idna=2.9=py_1
- ivar=1.1_beta=h3ae53b1_0
- jinja2=2.11.1=py_0
- joblib=0.14.1=py_0
- jpeg=9c=h14c3975_1001
- kiwisolver=1.1.0=py36hdb11119_1
- krb5=1.16.4=h2fd8d38_0
- lcms2=2.9=hbd6801e_1
- ld_impl_linux-64=2.33.1=h53a641e_8
- libblas=3.8.0=14_openblas
- libcblas=3.8.0=14_openblas
- libclang=9.0.1=default_hde54327_0
- libcurl=7.68.0=hda55be3_0
- libdeflate=1.5=h516909a_0
- libedit=3.1.20170329=hf8c457e_1001
- libffi=3.2.1=he1b5a44_1006
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=9.2.0=h24d8f2e_2
- libgd=2.2.5=h307a58e_1007
- libgfortran-ng=7.3.0=hdf63c60_5
- libgomp=9.2.0=h24d8f2e_2
- libiconv=1.15=h516909a_1005
- liblapack=3.8.0=14_openblas
- libllvm9=9.0.1=hc9558a2_0
- libopenblas=0.3.7=h5ec1e0e_6
- libpng=1.6.37=hed695b0_0
- libssh2=1.8.2=h22169c7_2
- libstdcxx-ng=9.2.0=hdf63c60_2
- libtiff=4.1.0=hc3755c2_3
- libuuid=2.32.1=h14c3975_1000
- libwebp=1.0.2=h56121f0_5
- libxcb=1.13=h14c3975_1002
- libxkbcommon=0.10.0=he1b5a44_0
- libxml2=2.9.10=hee79883_0
- llvm-openmp=8.0.1=hc9558a2_0
- lofreq=2.1.4=py36hc3dfafe_0
- lz4-c=1.8.3=he1b5a44_1001
- lzstring=1.0.4=py_1001
- make=4.3=h516909a_0
- markdown=3.2.1=py_0
- markupsafe=1.1.1=py36h8c4c3a4_1
- matplotlib=3.1.1=py36_2
- matplotlib-base=3.1.1=py36h250f245_2
- miniasm=0.3_r179=ha92aebf_0
- multiqc=1.8=py_2
- mummer=3.23=pl526he1b5a44_10
- muscle=3.8.1551=hc9558a2_5
- ncurses=6.1=hf484d3e_1002
- networkx=2.2=py_1
- nspr=4.25=he1b5a44_0
- nss=3.47=he751ad9_0
- numpy=1.18.1=py36h95a1406_0
- openjdk=11.0.1=h600c080_1018
- openmp=8.0.1=0
- openssl=1.1.1e=h516909a_0
- pango=1.42.4=ha030887_1
- parallel=20160622=1
- pcre=8.44=he1b5a44_0
- perl=5.26.2=h516909a_1006
- perl-app-cpanminus=1.7044=pl526_1
- perl-archive-tar=2.32=pl526_0
- perl-autoloader=5.74=pl526_2
- perl-base=2.23=pl526_1
- perl-business-isbn=3.004=pl526_0
- perl-business-isbn-data=20140910.003=pl526_0
- perl-carp=1.38=pl526_3
- perl-clone=0.42=pl526h516909a_0
- perl-common-sense=3.74=pl526_2
- perl-compress-raw-bzip2=2.087=pl526he1b5a44_0
- perl-compress-raw-zlib=2.087=pl526hc9558a2_0
- perl-config-general=2.63=pl526_0
- perl-constant=1.33=pl526_1
- perl-data-dumper=2.173=pl526_0
- perl-digest-hmac=1.03=pl526_3
- perl-digest-md5=2.55=pl526_0
- perl-digest-perl-md5=1.9=pl526_1
- perl-dynaloader=1.25=pl526_1
- perl-encode=2.88=pl526_1
- perl-encode-locale=1.05=pl526_6
- perl-exporter=5.72=pl526_1
- perl-exporter-tiny=1.002001=pl526_0
- perl-extutils-makemaker=7.36=pl526_1
- perl-file-listing=6.04=pl526_1
- perl-file-path=2.16=pl526_0
- perl-file-temp=0.2304=pl526_2
- perl-font-ttf=1.06=pl526_0
- perl-gd=2.71=pl526he860b03_0
- perl-html-parser=3.72=pl526h6bb024c_5
- perl-html-tagset=3.20=pl526_3
- perl-html-tree=5.07=pl526_1
- perl-http-cookies=6.04=pl526_0
- perl-http-daemon=6.01=pl526_1
- perl-http-date=6.02=pl526_3
- perl-http-message=6.18=pl526_0
- perl-http-negotiate=6.01=pl526_3
- perl-io-compress=2.087=pl526he1b5a44_0
- perl-io-html=1.001=pl526_2
- perl-io-socket-ssl=2.066=pl526_0
- perl-io-string=1.08=pl526_3
- perl-io-zlib=1.10=pl526_2
- perl-json=4.02=pl526_0
- perl-json-xs=2.34=pl526h6bb024c_3
- perl-libwww-perl=6.39=pl526_0
- perl-list-moreutils=0.428=pl526_1
- perl-list-moreutils-xs=0.428=pl526_0
- perl-lwp-mediatypes=6.04=pl526_0
- perl-lwp-protocol-https=6.07=pl526_4
- perl-math-bezier=0.01=pl526_1
- perl-math-round=0.07=pl526_1
- perl-math-vecstat=0.08=pl526_1
- perl-mime-base64=3.15=pl526_1
- perl-module-implementation=0.09=pl526_2
- perl-module-runtime=0.016=pl526_1
- perl-mozilla-ca=20180117=pl526_1
- perl-net-http=6.19=pl526_0
- perl-net-ssleay=1.88=pl526h90d6eec_0
- perl-ntlm=1.09=pl526_4
- perl-number-format=1.75=pl526_3
- perl-params-validate=1.29=pl526h14c3975_1
- perl-parent=0.236=pl526_1
- perl-pathtools=3.75=pl526h14c3975_1
- perl-readonly=2.05=pl526_0
- perl-regexp-common=2017060201=pl526_0
- perl-scalar-list-utils=1.52=pl526h516909a_0
- perl-set-intspan=1.19=pl526_1
- perl-socket=2.027=pl526_1
- perl-statistics-basic=1.6611=pl526_2
- perl-storable=3.15=pl526h14c3975_0
- perl-svg=2.84=pl526_0
- perl-test-requiresinternet=0.05=pl526_0
- perl-text-format=0.59=pl526_2
- perl-threaded=5.26.0=0
- perl-time-hires=1.9760=pl526h14c3975_1
- perl-time-local=1.28=pl526_1
- perl-try-tiny=0.30=pl526_1
- perl-types-serialiser=1.0=pl526_2
- perl-uri=1.76=pl526_0
- perl-www-robotrules=6.02=pl526_3
- perl-xml-namespacesupport=1.12=pl526_0
- perl-xml-parser=2.44=pl526h4e0c4b3_7
- perl-xml-sax=1.02=pl526_0
- perl-xml-sax-base=1.09=pl526_0
- perl-xml-sax-expat=0.51=pl526_3
- perl-xml-simple=2.25=pl526_1
- perl-xsloader=0.24=pl526_0
- picard=2.22.0=0
- pilon=1.23=2
- pip=20.0.2=py_2
- pixman=0.38.0=h516909a_1003
- pthread-stubs=0.4=h14c3975_1001
- pycparser=2.20=py_0
- pyopenssl=19.1.0=py_1
- pyparsing=2.4.6=py_0
- pyqt=5.12.3=py36hcca6a23_1
- pysocks=1.7.1=py36h9f0ad1d_1
- python=3.6.10=h9d8adfe_1009_cpython
- python-dateutil=2.8.1=py_0
- python_abi=3.6=1_cp36m
- pyyaml=5.3=py36h516909a_0
- qt=5.12.5=hd8c4c69_1
- quast=5.0.2=py36pl526ha92aebf_0
- r-base=3.6.2=h7ed4ef7_1
- racon=1.4.12=he513fc3_0
- readline=8.0=hf8c457e_0
- requests=2.23.0=py36_0
- samtools=1.9=h10a08f8_12
- sed=4.7=h1bed415_1000
- setuptools=46.0.0=py36h9f0ad1d_2
- simplejson=3.8.1=py36_0
- six=1.14.0=py_1
- snpeff=4.3.1t=3
- snpsift=4.3.1t=1
- spades=3.14.0=h2d02072_0
- spectra=0.0.11=py_1
- sqlite=3.30.1=hcee41ef_0
- tbb=2020.0=hfd86e86_0
- tk=8.6.10=hed695b0_0
- tktable=2.10=h555a92e_3
- tornado=6.0.4=py36h8c4c3a4_1
- trimmomatic=0.39=1
- unicycler=0.4.6=py36hdbcaa40_0
- urllib3=1.25.7=py36_0
- varscan=2.4.4=0
- wheel=0.34.2=py_1
- xorg-fixesproto=5.0=h14c3975_1002
- xorg-inputproto=2.3.2=h14c3975_1002
- xorg-kbproto=1.0.7=h14c3975_1002
- xorg-libice=1.0.10=h516909a_0
- xorg-libsm=1.2.3=h84519dc_1000
- xorg-libx11=1.6.9=h516909a_0
- xorg-libxau=1.0.9=h14c3975_0
- xorg-libxdmcp=1.1.3=h516909a_0
- xorg-libxext=1.3.4=h516909a_0
- xorg-libxfixes=5.0.3=h516909a_1004
- xorg-libxi=1.7.10=h516909a_0
- xorg-libxrender=0.9.10=h516909a_1002
- xorg-libxtst=1.2.3=h516909a_1002
- xorg-recordproto=1.14.2=h516909a_1002
- xorg-renderproto=0.11.1=h14c3975_1002
- xorg-xextproto=7.3.0=h14c3975_1002
- xorg-xproto=7.0.31=h14c3975_1007
- xz=5.2.4=h14c3975_1001
- yaml=0.2.2=h516909a_1
- zlib=1.2.11=h516909a_1006
- zstd=1.4.4=h3b9ef0a_1
- pip:
- pyqt5-sip==4.19.18
- pyqtwebengine==5.12.1
- pysam==0.15.4
prefix: /processing_Data/bioinformatics/pipelines/miniconda3/envs/virus_illumina_sispa