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removed unnecessary comments and commented out Workflow execution
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XaverStiensmeier committed Sep 23, 2024
1 parent fc0aa01 commit 6d400e7
Showing 1 changed file with 7 additions and 7 deletions.
14 changes: 7 additions & 7 deletions resources/playbook/roles_user/resistance_nextflow/tasks/main.yml
Original file line number Diff line number Diff line change
Expand Up @@ -11,8 +11,8 @@
- name: Install Java JRE on Debian/Ubuntu
become: True
apt:
name: default-jre # Package name for Java JRE on Debian-based systems
state: present # Ensure that the package is present, you can use "latest" as well
name: default-jre
state: present

- name: Get Nextflow
shell: wget -qO- https://get.nextflow.io | bash
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group: ubuntu
mode: '0775'

- name: Execute Nextflow workflow
become_user: ubuntu
shell: ./nextflow run resFinder.nf -profile slurm
args:
chdir: "/vol/spool" # Change to the directory where your workflow resides
#- name: Execute Nextflow workflow
# become_user: ubuntu
# shell: ./nextflow run resFinder.nf -profile slurm # run your workflow
# args:
# chdir: "/vol/spool" # Change to the directory where your workflow resides

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