Final publication release

This represents the version of the pipelines used for the Genome Research publication.

Major changes:

• Removes dependeny on CGAT annotations pipeline.
• All required GTFs are now packaged with pipelines
• Considerable updates for instructions on how to configure and run pipelines

Revised Publication release

Ensures consistent nomenclature for de-duplication methods: 'directional' in place of 'directional-adjacency;

0.0.2

• Finalises analyses for publication

Publication release

0.0.1

updates documentation