v5.14.0

Circuitscape v5.14.0

Diff since v5.13.3

Merged pull requests:

• Bump julia-actions/setup-julia from 1 to 2 (#413) (@dependabot[bot])
• CHOLMOD can now solve matrices with float32 values (Julia 1.11) (#418) (@ViralBShah)
• Update ci.yml (#420) (@ViralBShah)
• Support flags: use_unit_currents and use_direct_grounds (#421) (@ranjanan)
• Fix accumulator bug in network pairwise parallel mode (#422) (@ranjanan)
• Update Project.toml (#425) (@ViralBShah)

Closed issues:

• Loading Circuitscape in R (via Julia) (#381)
• Use Pkg extensions for CircuitscapeMKLPardiso (#389)
• type GraphProblem has no field cum_node_curr when parallelize=True (#398)
• Circuitscape not running in container (#401)
• Is there a QGIS version of the Circuitscape Tool in ArcGIS? (#402)
• different outputs from Circuitscape Python and Julia in advanced mode (#414)
• UndefRefError: access to undefined reference (#417)
• Included pairs file throw no method isless() (#423)

v5.13.3

Circuitscape v5.13.3

Diff since v5.13.2

Merged pull requests:

• Increase error tolerance for advanced mode (#410) (@vlandau)

v5.13.2

Circuitscape v5.13.2

Diff since v5.13.1

Merged pull requests:

• Bump actions/checkout from 3 to 4 (#395) (@dependabot[bot])
• CompatHelper: bump compat for AlgebraicMultigrid to 0.6, (keep existing compat) (#396) (@github-actions[bot])
• Bump actions/cache from 3 to 4 (#404) (@dependabot[bot])
• increase solve error tolerance from 1e-6 to 1e-4 (#407) (@vlandau)
• Bump codecov/codecov-action from 3 to 4 (#409) (@dependabot[bot])

Closed issues:

• pkg test failed (#364)
• Precompilation warning for a missing type (#403)
• Increase tolerance of assert check for solve accuracy, or add option to allow failure. (#406)

v5.13.1

Circuitscape v5.13.1

Diff since v5.13.0

Closed issues:

• "KeyError: key ([#],[#]) not found" (#260)
• Julia states my habitat file is empty (#366)
• Circuitscape stop working in advanced and one-to-all mode (#382)

Merged pull requests:

• CompatHelper: add new compat entry for DelimitedFiles at version 1, (keep existing compat) (#391) (@github-actions[bot])
• CompatHelper: bump compat for GZip to 0.6, (keep existing compat) (#392) (@github-actions[bot])
• In advanced mode, write current maps if any of the current map flags are true (#393) (@ranjanan)
• Release 5.13.1 (#394) (@ranjanan)

v5.13.0

Circuitscape v5.13.0

Diff since v5.12.3

Merged pull requests:

• Update Julia version compat to 1.9 (#384) (@ranjanan)

v5.12.3

Circuitscape v5.12.3

Diff since v5.12.2

Merged pull requests:

• Fix indexing while reading source and ground files (#378) (@ranjanan)

v5.12.2

Circuitscape v5.12.2

Diff since v5.12.1

Closed issues:

• .out file not correct (#159)
• ERROR: DimensionMismatch (#199)
• Include pairs not implemented in the polygon focal point case (#278)
• ncol warning (#285)
• Included pairs file ignored (#341)
• Short circuit regions not recognized (#353)
• Assertion error: linear solve did not converge in single precision (#362)
• Nothing happens after first round of calculations in all-to-one mode (#367)
• AssertionError: norm(G * v .- curr) / norm(curr) - multiple failures (#370)

Merged pull requests:

• add include pairs logic when polygons in point files (#374) (@ranjanan)
• write correct solver in output file (#375) (@ranjanan)
• network: check if nodes start from zero (#376) (@ranjanan)

v5.12.1

Circuitscape v5.12.1

Diff since v5.12.0

Closed issues:

• Error happens in Julia. "At least one focal node location falls outside of habitat map" (#360)
• Invalid index Error, but model runs fine on GUI (#368)
• Advanced run not completing (see also #131) (#369)

Merged pull requests:

• While making current maps, check for both (node1,node2) and (node2,node1) (#372) (@ranjanan)
• Speedup a common advanced mode calc (#373) (@ranjanan)

v5.12.0

Circuitscape v5.12.0

Diff since v5.11.2

Closed issues:

• ERROR: LoadError: InitError: could not load library "libproj.so" libcurl.so: version `CURL_4' not found (#352)
• Error issue question (#356)

Merged pull requests:

• CompatHelper: bump compat for ArchGDAL to 0.9, (keep existing compat) (#361) (@github-actions[bot])
• Move Pardiso solver to lib (#371) (@ranjanan)

v5.11.2

Circuitscape v5.11.2

Diff since v5.11.1

Closed issues:

• ERROR: ArgumentError: column indices J[k] must satisfy 1 <= J[k] <= n (#333)
• ArgumentError: dense matrix construction failed for unknown reasons (#334)

Merged pull requests:

• fix sparse mat constrcution (#357) (@ranjanan)