This repository contains tools and workflows for the analysis of single cell RNA-Seq data. Currently there are 2 workflows available:
- Smart-Seq2 protocol
- 10x Genomics protocol.
These workflows are based on the workflow manager Eoulsan, which is a framework dedicated to high throughput sequencing data analysis on distributed computers.
Here is a quick access to the main pages:
- Install Eoulsan
- New user's tutorials:
- Reference website to get the complete documentation.
- Developers wiki to get information on how to contribute to the Eoulsan project and develop plug-ins.