Automatic processing of single-cell RNA seq data analysis

This repository contains tools and workflows for the analysis of single cell RNA-Seq data. Currently there are 2 workflows available:

• Smart-Seq2 protocol
• 10x Genomics protocol.

These workflows are based on the workflow manager Eoulsan, which is a framework dedicated to high throughput sequencing data analysis on distributed computers.

Here is a quick access to the main pages:

• Install Eoulsan
• New user's tutorials:
  • Single cell RNA-seq (SmartSeq2)
  • Single cell RNA-seq (10x Genomics)
• Reference website to get the complete documentation.
• Developers wiki to get information on how to contribute to the Eoulsan project and develop plug-ins.