Merge pull request #96 from Darcy220606/dev

patch release to fix minor bugs
Darcy220606 · Mar 21, 2024 · 83b4ffc · 83b4ffc
2 parents ac37b6f + 537c7a2
commit 83b4ffc
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Showing 5 changed files with 9 additions and 5 deletions.
diff --git a/CHANGES.txt b/CHANGES.txt
@@ -48,3 +48,6 @@ v<0.2.1>, <14.03.2024>
     -- Adjusted readme for installation setup
     -- Fixed the `./temp` dir removal step at the end of the process
     -- Changed the default matrix in diamond blastp to PAM250
+v<0.2.2>, <21.03.2024>
+    -- Added a check if ./temp dir is found before removal. This caused problems with pipeline setups.
+
diff --git a/README.md b/README.md
@@ -77,7 +77,7 @@ conda env create -f ./ampcombi/environment.yml
 
 - Using **singularity and docker**:
 ```
-
+singularity pull ampcombi:0.2.2--pyhdfd78af_0
 ```
 
 - From git repository:

diff --git a/ampcombi/ampcombi.py b/ampcombi/ampcombi.py
@@ -339,8 +339,9 @@ def parse_tables(args):
             sample_summary_df.to_csv(samplelist[i] +'/'+samplelist[i]+'_ampcombi.tsv', sep='\t', index=False)
             print(f'The summary file for {samplelist[i]} was saved to {samplelist[i]}.tsv')
 
-    # Remove the temp directory
-    shutil.rmtree('./temp')
+    # Remove the temp directory if it exists
+    if os.path.exists('./temp'):
+        shutil.rmtree('./temp')
 
 #########################################
 # FUNCTION : CONCATENATING

diff --git a/ampcombi/version.py b/ampcombi/version.py
@@ -1 +1 @@
-__version__ = '0.2.1'
+__version__ = '0.2.2'
diff --git a/setup.py b/setup.py
@@ -5,7 +5,7 @@
 
 setup(
     name='AMPcombi',
-    version='0.2.1',
+    version='0.2.2',
     author='Anan Ibrahim, Louisa Perelo',
     author_email='ananhamido@hotmail.com, louperelo@gmail.com',
     packages=['ampcombi'],