script for getting linux VM ready for benchmarking

benchmarking/scripts/linux_download_tools.sh

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+#########################
+# Installs for linux VM
+#########################
+
+# Basic installs
+sudo apt update
+sudo apt install libgomp1
+sudo apt install zip
+
+
+# python
+sudo apt install python3-pip
+sudo apt-get install python3.6
+pip install numpy
+
+# JVM for FastViromeExplorer
+sudo apt install default-jdk
+sudo apt-get install libncurses5-dev libncursesw5-dev
+sudo apt install lzma-dev
+
+# for rust cc
+sudo apt install build-essential
+
+# install (GLIBCXX)
+sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test
+sudo apt install -y g++-11
+
+sudo cp ../linux-binaries/* /bin/