Fix/virsorter2 #80
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| name: Python unit tests | |
| on: | |
| push: | |
| branches: [ "master" ] | |
| pull_request: | |
| branches: [ "master", "dev" ] | |
| permissions: | |
| contents: read | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: "3.10" | |
| - name: update pip | |
| run: | | |
| python -m pip install --upgrade pip | |
| - name: Install dependencies | |
| run: | | |
| pip install -r requirements-test.txt | |
| pip install --upgrade numpy pandas | |
| - name: Unit tests | |
| run: | | |
| # TODO, improve the pythonpath handling | |
| PYTHONPATH="$PYTHONPATH:bin" | |
| python -m unittest discover tests |