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{2023.06}[foss/2021b] OpenFoam v2112 #330

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merged 6 commits into from
Sep 9, 2023
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@laraPPr laraPPr commented Sep 8, 2023

edit (by @boegel, 2023-09-09):

60 out of 105 required modules missing:

* Bison/3.7.6-GCCcore-11.2.0 (Bison-3.7.6-GCCcore-11.2.0.eb)
* METIS/5.1.0-GCCcore-11.2.0 (METIS-5.1.0-GCCcore-11.2.0.eb)
* Eigen/3.4.0-GCCcore-11.2.0 (Eigen-3.4.0-GCCcore-11.2.0.eb)
* pkgconf/1.8.0-GCCcore-11.2.0 (pkgconf-1.8.0-GCCcore-11.2.0.eb)
* libpng/1.6.37-GCCcore-11.2.0 (libpng-1.6.37-GCCcore-11.2.0.eb)
* gzip/1.10-GCCcore-11.2.0 (gzip-1.10-GCCcore-11.2.0.eb)
* MPFR/4.1.0-GCCcore-11.2.0 (MPFR-4.1.0-GCCcore-11.2.0.eb)
* lz4/1.9.3-GCCcore-11.2.0 (lz4-1.9.3-GCCcore-11.2.0.eb)
* NASM/2.15.05-GCCcore-11.2.0 (NASM-2.15.05-GCCcore-11.2.0.eb)
* zstd/1.5.0-GCCcore-11.2.0 (zstd-1.5.0-GCCcore-11.2.0.eb)
* libjpeg-turbo/2.0.6-GCCcore-11.2.0 (libjpeg-turbo-2.0.6-GCCcore-11.2.0.eb)
* pixman/0.40.0-GCCcore-11.2.0 (pixman-0.40.0-GCCcore-11.2.0.eb)
* Brotli/1.0.9-GCCcore-11.2.0 (Brotli-1.0.9-GCCcore-11.2.0.eb)
* libiconv/1.16-GCCcore-11.2.0 (libiconv-1.16-GCCcore-11.2.0.eb)
* freetype/2.11.0-GCCcore-11.2.0 (freetype-2.11.0-GCCcore-11.2.0.eb)
* Doxygen/1.9.1-GCCcore-11.2.0 (Doxygen-1.9.1-GCCcore-11.2.0.eb)
* fontconfig/2.13.94-GCCcore-11.2.0 (fontconfig-2.13.94-GCCcore-11.2.0.eb)
* libgd/2.3.3-GCCcore-11.2.0 (libgd-2.3.3-GCCcore-11.2.0.eb)
* ICU/69.1-GCCcore-11.2.0 (ICU-69.1-GCCcore-11.2.0.eb)
* Boost/1.77.0-GCC-11.2.0 (Boost-1.77.0-GCC-11.2.0.eb)
* libcerf/1.17-GCCcore-11.2.0 (libcerf-1.17-GCCcore-11.2.0.eb)
* Ninja/1.10.2-GCCcore-11.2.0 (Ninja-1.10.2-GCCcore-11.2.0.eb)
* Meson/0.58.2-GCCcore-11.2.0 (Meson-0.58.2-GCCcore-11.2.0.eb)
* Mako/1.1.4-GCCcore-11.2.0 (Mako-1.1.4-GCCcore-11.2.0.eb)
* Python/2.7.18-GCCcore-11.2.0-bare (Python-2.7.18-GCCcore-11.2.0-bare.eb)
* ffnvcodec/11.1.5.2 (ffnvcodec-11.1.5.2.eb)
* PCRE/8.45-GCCcore-11.2.0 (PCRE-8.45-GCCcore-11.2.0.eb)
* GLib/2.69.1-GCCcore-11.2.0 (GLib-2.69.1-GCCcore-11.2.0.eb)
* X11/20210802-GCCcore-11.2.0 (X11-20210802-GCCcore-11.2.0.eb)
* cairo/1.16.0-GCCcore-11.2.0 (cairo-1.16.0-GCCcore-11.2.0.eb)
* GObject-Introspection/1.68.0-GCCcore-11.2.0 (GObject-Introspection-1.68.0-GCCcore-11.2.0.eb)
* netCDF/4.8.1-gompi-2021b (netCDF-4.8.1-gompi-2021b.eb)
* SCOTCH/6.1.2-gompi-2021b (SCOTCH-6.1.2-gompi-2021b.eb)
* libdrm/2.4.107-GCCcore-11.2.0 (libdrm-2.4.107-GCCcore-11.2.0.eb)
* re2c/2.2-GCCcore-11.2.0 (re2c-2.2-GCCcore-11.2.0.eb)
* HarfBuzz/2.8.2-GCCcore-11.2.0 (HarfBuzz-2.8.2-GCCcore-11.2.0.eb)
* x264/20210613-GCCcore-11.2.0 (x264-20210613-GCCcore-11.2.0.eb)
* libglvnd/1.3.3-GCCcore-11.2.0 (libglvnd-1.3.3-GCCcore-11.2.0.eb)
* double-conversion/3.1.5-GCCcore-11.2.0 (double-conversion-3.1.5-GCCcore-11.2.0.eb)
* FriBidi/1.0.10-GCCcore-11.2.0 (FriBidi-1.0.10-GCCcore-11.2.0.eb)
* LAME/3.100-GCCcore-11.2.0 (LAME-3.100-GCCcore-11.2.0.eb)
* Pango/1.48.8-GCCcore-11.2.0 (Pango-1.48.8-GCCcore-11.2.0.eb)
* libunwind/1.5.0-GCCcore-11.2.0 (libunwind-1.5.0-GCCcore-11.2.0.eb)
* PCRE2/10.37-GCCcore-11.2.0 (PCRE2-10.37-GCCcore-11.2.0.eb)
* LLVM/12.0.1-GCCcore-11.2.0 (LLVM-12.0.1-GCCcore-11.2.0.eb)
* graphite2/1.3.14-GCCcore-11.2.0 (graphite2-1.3.14-GCCcore-11.2.0.eb)
* Yasm/1.3.0-GCCcore-11.2.0 (Yasm-1.3.0-GCCcore-11.2.0.eb)
* Mesa/21.1.7-GCCcore-11.2.0 (Mesa-21.1.7-GCCcore-11.2.0.eb)
* libGLU/9.0.2-GCCcore-11.2.0 (libGLU-9.0.2-GCCcore-11.2.0.eb)
* x265/3.5-GCCcore-11.2.0 (x265-3.5-GCCcore-11.2.0.eb)
* FFmpeg/4.3.2-GCCcore-11.2.0 (FFmpeg-4.3.2-GCCcore-11.2.0.eb)
* snappy/1.1.9-GCCcore-11.2.0 (snappy-1.1.9-GCCcore-11.2.0.eb)
* NSPR/4.32-GCCcore-11.2.0 (NSPR-4.32-GCCcore-11.2.0.eb)
* NSS/3.69-GCCcore-11.2.0 (NSS-3.69-GCCcore-11.2.0.eb)
* JasPer/2.0.33-GCCcore-11.2.0 (JasPer-2.0.33-GCCcore-11.2.0.eb)
* Qt5/5.15.2-GCCcore-11.2.0 (Qt5-5.15.2-GCCcore-11.2.0.eb)
* CGAL/4.14.3-gompi-2021b (CGAL-4.14.3-gompi-2021b.eb)
* ParaView/5.9.1-foss-2021b-mpi (ParaView-5.9.1-foss-2021b-mpi.eb)
* gnuplot/5.4.2-GCCcore-11.2.0 (gnuplot-5.4.2-GCCcore-11.2.0.eb)
* OpenFOAM/v2112-foss-2021b (OpenFOAM-v2112-foss-2021b.eb)

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eessi-bot bot commented Sep 8, 2023

Instance eessi-bot-citc-aws is configured to build:

  • arch x86_64/generic for repo eessi-2021.12
  • arch x86_64/generic for repo eessi-2023.06-compat
  • arch x86_64/generic for repo eessi-2023.06-software
  • arch x86_64/intel/haswell for repo eessi-2021.12
  • arch x86_64/intel/haswell for repo eessi-2023.06-compat
  • arch x86_64/intel/haswell for repo eessi-2023.06-software
  • arch x86_64/intel/skylake_avx512 for repo eessi-2021.12
  • arch x86_64/intel/skylake_avx512 for repo eessi-2023.06-compat
  • arch x86_64/intel/skylake_avx512 for repo eessi-2023.06-software
  • arch x86_64/amd/zen2 for repo eessi-2021.12
  • arch x86_64/amd/zen2 for repo eessi-2023.06-compat
  • arch x86_64/amd/zen2 for repo eessi-2023.06-software
  • arch x86_64/amd/zen3 for repo eessi-2021.12
  • arch x86_64/amd/zen3 for repo eessi-2023.06-compat
  • arch x86_64/amd/zen3 for repo eessi-2023.06-software
  • arch aarch64/generic for repo eessi-2021.12
  • arch aarch64/generic for repo eessi-2023.06-compat
  • arch aarch64/generic for repo eessi-2023.06-software
  • arch aarch64/neoverse_n1 for repo eessi-2021.12
  • arch aarch64/neoverse_n1 for repo eessi-2023.06-compat
  • arch aarch64/neoverse_n1 for repo eessi-2023.06-software
  • arch aarch64/neoverse_v1 for repo eessi-2021.12
  • arch aarch64/neoverse_v1 for repo eessi-2023.06-compat
  • arch aarch64/neoverse_v1 for repo eessi-2023.06-software

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laraPPr commented Sep 8, 2023

bot: build repo:eessi-2023.06-software

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Updates by the bot instance eessi-bot-citc-aws (click for details)

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New job on instance eessi-bot-citc-aws for architecture x86_64-generic for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_330/7216

date job status comment
Sep 08 08:22:02 UTC 2023 submitted job id 7216 awaits release by job manager
Sep 08 08:22:53 UTC 2023 released job awaits launch by Slurm scheduler
Sep 08 08:27:10 UTC 2023 running job 7216 is running
Sep 08 08:41:51 UTC 2023 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-7216.out
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-generic-1694162447.tar.gzsize: 5 MiB (6186623 bytes)
entries: 1127
modules under 2023.06/software/linux/x86_64/generic/modules/all
Bison/3.7.6-GCCcore-11.2.0.lua
Eigen/3.4.0-GCCcore-11.2.0.lua
METIS/5.1.0-GCCcore-11.2.0.lua
SCOTCH/6.1.2-gompi-2021b.lua
software under 2023.06/software/linux/x86_64/generic/software
Bison/3.7.6-GCCcore-11.2.0
Eigen/3.4.0-GCCcore-11.2.0
METIS/5.1.0-GCCcore-11.2.0
SCOTCH/6.1.2-gompi-2021b
other under 2023.06/software/linux/x86_64/generic
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp

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eessi-bot bot commented Sep 8, 2023

New job on instance eessi-bot-citc-aws for architecture x86_64-intel-haswell for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_330/7217

date job status comment
Sep 08 08:22:04 UTC 2023 submitted job id 7217 awaits release by job manager
Sep 08 08:22:51 UTC 2023 released job awaits launch by Slurm scheduler
Sep 08 08:27:08 UTC 2023 running job 7217 is running
Sep 08 08:40:45 UTC 2023 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-7217.out
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-intel-haswell-1694162408.tar.gzsize: 5 MiB (6209648 bytes)
entries: 1127
modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all
Bison/3.7.6-GCCcore-11.2.0.lua
Eigen/3.4.0-GCCcore-11.2.0.lua
METIS/5.1.0-GCCcore-11.2.0.lua
SCOTCH/6.1.2-gompi-2021b.lua
software under 2023.06/software/linux/x86_64/intel/haswell/software
Bison/3.7.6-GCCcore-11.2.0
Eigen/3.4.0-GCCcore-11.2.0
METIS/5.1.0-GCCcore-11.2.0
SCOTCH/6.1.2-gompi-2021b
other under 2023.06/software/linux/x86_64/intel/haswell
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp

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eessi-bot bot commented Sep 8, 2023

New job on instance eessi-bot-citc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_330/7218

date job status comment
Sep 08 08:22:06 UTC 2023 submitted job id 7218 awaits release by job manager
Sep 08 08:22:49 UTC 2023 released job awaits launch by Slurm scheduler
Sep 08 08:27:05 UTC 2023 running job 7218 is running
Sep 08 08:39:37 UTC 2023 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-7218.out
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1694162352.tar.gzsize: 5 MiB (6215293 bytes)
entries: 1127
modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all
Bison/3.7.6-GCCcore-11.2.0.lua
Eigen/3.4.0-GCCcore-11.2.0.lua
METIS/5.1.0-GCCcore-11.2.0.lua
SCOTCH/6.1.2-gompi-2021b.lua
software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software
Bison/3.7.6-GCCcore-11.2.0
Eigen/3.4.0-GCCcore-11.2.0
METIS/5.1.0-GCCcore-11.2.0
SCOTCH/6.1.2-gompi-2021b
other under 2023.06/software/linux/x86_64/intel/skylake_avx512
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp

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New job on instance eessi-bot-citc-aws for architecture x86_64-amd-zen2 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_330/7219

date job status comment
Sep 08 08:22:08 UTC 2023 submitted job id 7219 awaits release by job manager
Sep 08 08:22:47 UTC 2023 released job awaits launch by Slurm scheduler
Sep 08 08:27:04 UTC 2023 running job 7219 is running
Sep 08 08:40:43 UTC 2023 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-7219.out
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen2-1694162368.tar.gzsize: 5 MiB (6202829 bytes)
entries: 1127
modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all
Bison/3.7.6-GCCcore-11.2.0.lua
Eigen/3.4.0-GCCcore-11.2.0.lua
METIS/5.1.0-GCCcore-11.2.0.lua
SCOTCH/6.1.2-gompi-2021b.lua
software under 2023.06/software/linux/x86_64/amd/zen2/software
Bison/3.7.6-GCCcore-11.2.0
Eigen/3.4.0-GCCcore-11.2.0
METIS/5.1.0-GCCcore-11.2.0
SCOTCH/6.1.2-gompi-2021b
other under 2023.06/software/linux/x86_64/amd/zen2
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp

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eessi-bot bot commented Sep 8, 2023

New job on instance eessi-bot-citc-aws for architecture x86_64-amd-zen3 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_330/7220

date job status comment
Sep 08 08:22:10 UTC 2023 submitted job id 7220 awaits release by job manager
Sep 08 08:22:45 UTC 2023 released job awaits launch by Slurm scheduler
Sep 08 08:27:01 UTC 2023 running job 7220 is running
Sep 08 08:39:36 UTC 2023 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-7220.out
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen3-1694162309.tar.gzsize: 5 MiB (6205885 bytes)
entries: 1127
modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all
Bison/3.7.6-GCCcore-11.2.0.lua
Eigen/3.4.0-GCCcore-11.2.0.lua
METIS/5.1.0-GCCcore-11.2.0.lua
SCOTCH/6.1.2-gompi-2021b.lua
software under 2023.06/software/linux/x86_64/amd/zen3/software
Bison/3.7.6-GCCcore-11.2.0
Eigen/3.4.0-GCCcore-11.2.0
METIS/5.1.0-GCCcore-11.2.0
SCOTCH/6.1.2-gompi-2021b
other under 2023.06/software/linux/x86_64/amd/zen3
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp

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New job on instance eessi-bot-citc-aws for architecture aarch64-generic for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_330/7221

date job status comment
Sep 08 08:22:12 UTC 2023 submitted job id 7221 awaits release by job manager
Sep 08 08:22:43 UTC 2023 released job awaits launch by Slurm scheduler
Sep 08 08:27:00 UTC 2023 running job 7221 is running
Sep 08 08:41:49 UTC 2023 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-7221.out
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-generic-1694162493.tar.gzsize: 6 MiB (6834957 bytes)
entries: 1127
modules under 2023.06/software/linux/aarch64/generic/modules/all
Bison/3.7.6-GCCcore-11.2.0.lua
Eigen/3.4.0-GCCcore-11.2.0.lua
METIS/5.1.0-GCCcore-11.2.0.lua
SCOTCH/6.1.2-gompi-2021b.lua
software under 2023.06/software/linux/aarch64/generic/software
Bison/3.7.6-GCCcore-11.2.0
Eigen/3.4.0-GCCcore-11.2.0
METIS/5.1.0-GCCcore-11.2.0
SCOTCH/6.1.2-gompi-2021b
other under 2023.06/software/linux/aarch64/generic
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp

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eessi-bot bot commented Sep 8, 2023

New job on instance eessi-bot-citc-aws for architecture aarch64-neoverse_n1 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_330/7222

date job status comment
Sep 08 08:22:14 UTC 2023 submitted job id 7222 awaits release by job manager
Sep 08 08:22:41 UTC 2023 released job awaits launch by Slurm scheduler
Sep 08 08:26:58 UTC 2023 running job 7222 is running
Sep 08 08:43:54 UTC 2023 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-7222.out
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-neoverse_n1-1694162587.tar.gzsize: 6 MiB (6839736 bytes)
entries: 1127
modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all
Bison/3.7.6-GCCcore-11.2.0.lua
Eigen/3.4.0-GCCcore-11.2.0.lua
METIS/5.1.0-GCCcore-11.2.0.lua
SCOTCH/6.1.2-gompi-2021b.lua
software under 2023.06/software/linux/aarch64/neoverse_n1/software
Bison/3.7.6-GCCcore-11.2.0
Eigen/3.4.0-GCCcore-11.2.0
METIS/5.1.0-GCCcore-11.2.0
SCOTCH/6.1.2-gompi-2021b
other under 2023.06/software/linux/aarch64/neoverse_n1
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp

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New job on instance eessi-bot-citc-aws for architecture aarch64-neoverse_v1 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_330/7223

date job status comment
Sep 08 08:22:15 UTC 2023 submitted job id 7223 awaits release by job manager
Sep 08 08:22:39 UTC 2023 released job awaits launch by Slurm scheduler
Sep 08 08:26:56 UTC 2023 running job 7223 is running
Sep 08 08:41:47 UTC 2023 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-7223.out
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-neoverse_v1-1694162466.tar.gzsize: 6 MiB (6835440 bytes)
entries: 1127
modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all
Bison/3.7.6-GCCcore-11.2.0.lua
Eigen/3.4.0-GCCcore-11.2.0.lua
METIS/5.1.0-GCCcore-11.2.0.lua
SCOTCH/6.1.2-gompi-2021b.lua
software under 2023.06/software/linux/aarch64/neoverse_v1/software
Bison/3.7.6-GCCcore-11.2.0
Eigen/3.4.0-GCCcore-11.2.0
METIS/5.1.0-GCCcore-11.2.0
SCOTCH/6.1.2-gompi-2021b
other under 2023.06/software/linux/aarch64/neoverse_v1
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp

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laraPPr commented Sep 8, 2023

7216

== 2023-09-08 08:40:15,718 build_log.py:171 ERROR EasyBuild crashed with an error 
(at easybuild/tools/build_log.py:111 in caller_info): Build of /cvmfs/pilot.eessi-
hpc.org/versions/2023.06/software/linux/x86_64/generic/software/EasyBuild/
4.8.0/easybuild/easyconfigs/m/MPFR/MPFR-4.1.0-GCCcore-11.2.0.eb failed (err: 
'build failed (first 300 chars): cmd "mkdir -p /cvmfs/pilot.eessi-hpc.org/versions
/2023.06/software/linux/x86_64/generic/software/MPFR/4.1.0-GCCcore-11.2.0
/lib && cp -a src/.libs/libmpfr.so* /cvmfs/pilot.eessi-hpc.org/versions/2023.06/
software/linux/x86_64/generic/software/MPFR/4.1.0-GCCcore-11.2.0/lib && 
 make check  && rm -r /cvm') (at easybuild/main.py:174 in build_and_install_software)

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boegel commented Sep 8, 2023

Hmm, looks like it's because a single test failed:

...
FAIL: tsprintf
...
============================================================================
Testsuite summary for MPFR 4.1.0
============================================================================
# TOTAL: 183
# PASS:  182
# SKIP:  0
# XFAIL: 0
# FAIL:  1
# XPASS: 0
# ERROR: 0
============================================================================
See tests/test-suite.log
============================================================================
make[3]: *** [Makefile:2830: test-suite.log] Error 1

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boegel commented Sep 8, 2023

@laraPPr Can you check if you find any clues upstream on this?

mpfr-4.1.0/tests/test-suite.log
======================================
   MPFR 4.1.0: tests/test-suite.log
======================================

# TOTAL: 183
# PASS:  182
# SKIP:  0
# XFAIL: 0
# FAIL:  1
# XPASS: 0
# ERROR: 0

.. contents:: :depth: 2

FAIL: tsprintf
==============

Error in mpfr_vsprintf (s, "%0+ -'13.10Pd:", ...);
expected: "+01,234,567  :"
got:      "+0001,234,567:"
FAIL tsprintf (exit status: 1)

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laraPPr commented Sep 8, 2023

yes

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laraPPr commented Sep 8, 2023

I found this, here, but I don't know if it is relevant to us:

A test of the thousands separator in tsprintf.c is based on the output from the GNU C Library up to 2.36, which is incorrect. The output has changed in 2.37 (partly fixed), so that tsprintf fails with glibc 2.37. The tsprintf-thousands patch modifies the test to conform to POSIX and also avoid the buggy case in 2.36 and below. However, this new test, which was expected to succeed, triggers a serious bug in 2.37 (bug 30068 / CVE-2023-25139). We did not modify the test again since this bug affects MPFR's mpfr_sprintf function, with a possible buffer overflow in particular cases. This bug has been fixed in the 2.37 branch. In short, this patch is useful (and needed) for a fixed glibc 2.37 and some other libraries, depending on the current locales.
Corresponding changesets in the 4.2 branch: 4f03d40b5, 78ff7526d, e66bb7121.

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boegel commented Sep 8, 2023

OK, excellent, so we should try and apply that patch to MPFR in EasyBuild, and then use --from-pr here.

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boegel commented Sep 8, 2023

@laraPPr Let's see if easybuilders/easybuild-easyconfigs#18746 fixes the MPFR test problem

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laraPPr commented Sep 8, 2023

bot: build repo:eessi-2023.06-software arch:x86_64/generic

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bot: build repo:eessi-2023.06-software arch:x86_64/generic

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bot: build repo:eessi-2023.06-software arch:x86_64/generic

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New job on instance eessi-bot-citc-aws for architecture x86_64-generic for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_330/7227

date job status comment
Sep 08 12:46:23 UTC 2023 submitted job id 7227 awaits release by job manager
Sep 08 12:46:34 UTC 2023 released job awaits launch by Slurm scheduler
Sep 08 12:50:37 UTC 2023 running job 7227 is running
Sep 08 19:54:02 UTC 2023 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-7227.out
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✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
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eessi-2023.06-software-linux-x86_64-generic-1694202494.tar.gzsize: 1518 MiB (1592502717 bytes)
entries: 130831
modules under 2023.06/software/linux/x86_64/generic/modules/all
Bison/3.7.6-GCCcore-11.2.0.lua
Boost/1.77.0-GCC-11.2.0.lua
Brotli/1.0.9-GCCcore-11.2.0.lua
cairo/1.16.0-GCCcore-11.2.0.lua
CGAL/4.14.3-gompi-2021b.lua
double-conversion/3.1.5-GCCcore-11.2.0.lua
Doxygen/1.9.1-GCCcore-11.2.0.lua
Eigen/3.4.0-GCCcore-11.2.0.lua
FFmpeg/4.3.2-GCCcore-11.2.0.lua
ffnvcodec/11.1.5.2.lua
fontconfig/2.13.94-GCCcore-11.2.0.lua
freetype/2.11.0-GCCcore-11.2.0.lua
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GLib/2.69.1-GCCcore-11.2.0.lua
gnuplot/5.4.2-GCCcore-11.2.0.lua
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LAME/3.100-GCCcore-11.2.0.lua
libcerf/1.17-GCCcore-11.2.0.lua
libdrm/2.4.107-GCCcore-11.2.0.lua
libgd/2.3.3-GCCcore-11.2.0.lua
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Yasm/1.3.0-GCCcore-11.2.0
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other under 2023.06/software/linux/x86_64/generic
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp
Sep 09 08:14:54 UTC 2023 uploaded transfer of eessi-2023.06-software-linux-x86_64-generic-1694202494.tar.gz to S3 bucket succeeded

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bot: build repo:eessi-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi-2023.06-software arch:x86_64/intel/skylake_avx512
bot: build repo:eessi-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi-2023.06-software arch:aarch64/generic
bot: build repo:eessi-2023.06-software arch:aarch64/neoverse_n1
bot: build repo:eessi-2023.06-software arch:aarch64/neoverse_v1

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New job on instance eessi-bot-citc-aws for architecture x86_64-intel-haswell for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_330/7228

date job status comment
Sep 08 20:39:40 UTC 2023 submitted job id 7228 awaits release by job manager
Sep 08 20:40:21 UTC 2023 released job awaits launch by Slurm scheduler
Sep 08 20:44:41 UTC 2023 running job 7228 is running
Sep 09 03:52:22 UTC 2023 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-7228.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-intel-haswell-1694231199.tar.gzsize: 1525 MiB (1599935346 bytes)
entries: 130832
modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all
Bison/3.7.6-GCCcore-11.2.0.lua
Boost/1.77.0-GCC-11.2.0.lua
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CGAL/4.14.3-gompi-2021b.lua
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Eigen/3.4.0-GCCcore-11.2.0.lua
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GLib/2.69.1-GCCcore-11.2.0.lua
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Sep 09 08:17:42 UTC 2023 uploaded transfer of eessi-2023.06-software-linux-x86_64-intel-haswell-1694231199.tar.gz to S3 bucket succeeded

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eessi-bot bot commented Sep 8, 2023

New job on instance eessi-bot-citc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_330/7229

date job status comment
Sep 08 20:39:47 UTC 2023 submitted job id 7229 awaits release by job manager
Sep 08 20:40:19 UTC 2023 released job awaits launch by Slurm scheduler
Sep 08 20:43:33 UTC 2023 running job 7229 is running
Sep 09 02:08:53 UTC 2023 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-7229.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1694225030.tar.gzsize: 1543 MiB (1618649086 bytes)
entries: 130835
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Sep 09 08:15:36 UTC 2023 uploaded transfer of eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1694225030.tar.gz to S3 bucket succeeded

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eessi-bot bot commented Sep 8, 2023

New job on instance eessi-bot-citc-aws for architecture x86_64-amd-zen2 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_330/7230

date job status comment
Sep 08 20:39:53 UTC 2023 submitted job id 7230 awaits release by job manager
Sep 08 20:40:17 UTC 2023 released job awaits launch by Slurm scheduler
Sep 08 20:43:31 UTC 2023 running job 7230 is running
Sep 09 02:31:45 UTC 2023 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-7230.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen2-1694226391.tar.gzsize: 1524 MiB (1598486409 bytes)
entries: 130832
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Sep 09 08:16:18 UTC 2023 uploaded transfer of eessi-2023.06-software-linux-x86_64-amd-zen2-1694226391.tar.gz to S3 bucket succeeded

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eessi-bot bot commented Sep 8, 2023

New job on instance eessi-bot-citc-aws for architecture x86_64-amd-zen3 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_330/7231

date job status comment
Sep 08 20:40:00 UTC 2023 submitted job id 7231 awaits release by job manager
Sep 08 20:40:15 UTC 2023 released job awaits launch by Slurm scheduler
Sep 08 20:43:29 UTC 2023 running job 7231 is running
Sep 09 01:34:09 UTC 2023 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-7231.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen3-1694223007.tar.gzsize: 1524 MiB (1598601751 bytes)
entries: 130832
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MPFR/4.1.0-GCCcore-11.2.0
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pkgconf/1.8.0-GCCcore-11.2.0
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re2c/2.2-GCCcore-11.2.0
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x265/3.5-GCCcore-11.2.0
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.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp
Sep 09 08:18:26 UTC 2023 uploaded transfer of eessi-2023.06-software-linux-x86_64-amd-zen3-1694223007.tar.gz to S3 bucket succeeded

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eessi-bot bot commented Sep 8, 2023

New job on instance eessi-bot-citc-aws for architecture aarch64-generic for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_330/7232

date job status comment
Sep 08 20:40:07 UTC 2023 submitted job id 7232 awaits release by job manager
Sep 08 20:40:12 UTC 2023 released job awaits launch by Slurm scheduler
Sep 08 20:44:36 UTC 2023 running job 7232 is running
Sep 09 01:51:44 UTC 2023 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-7232.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-generic-1694223934.tar.gzsize: 1440 MiB (1510354501 bytes)
entries: 130768
modules under 2023.06/software/linux/aarch64/generic/modules/all
Bison/3.7.6-GCCcore-11.2.0.lua
Boost/1.77.0-GCC-11.2.0.lua
Brotli/1.0.9-GCCcore-11.2.0.lua
cairo/1.16.0-GCCcore-11.2.0.lua
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double-conversion/3.1.5-GCCcore-11.2.0.lua
Doxygen/1.9.1-GCCcore-11.2.0.lua
Eigen/3.4.0-GCCcore-11.2.0.lua
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ffnvcodec/11.1.5.2.lua
fontconfig/2.13.94-GCCcore-11.2.0.lua
freetype/2.11.0-GCCcore-11.2.0.lua
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GLib/2.69.1-GCCcore-11.2.0.lua
gnuplot/5.4.2-GCCcore-11.2.0.lua
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pixman/0.40.0-GCCcore-11.2.0.lua
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other under 2023.06/software/linux/aarch64/generic
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp
Sep 09 08:16:59 UTC 2023 uploaded transfer of eessi-2023.06-software-linux-aarch64-generic-1694223934.tar.gz to S3 bucket succeeded

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eessi-bot bot commented Sep 8, 2023

New job on instance eessi-bot-citc-aws for architecture aarch64-neoverse_n1 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_330/7233

date job status comment
Sep 08 20:40:14 UTC 2023 submitted job id 7233 awaits release by job manager
Sep 08 20:41:26 UTC 2023 released job awaits launch by Slurm scheduler
Sep 08 20:44:47 UTC 2023 running job 7233 is running
Sep 09 02:02:31 UTC 2023 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-7233.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-neoverse_n1-1694224597.tar.gzsize: 1440 MiB (1510605439 bytes)
entries: 130768
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pkgconf/1.8.0-GCCcore-11.2.0.lua
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other under 2023.06/software/linux/aarch64/neoverse_n1
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp
Sep 09 08:19:06 UTC 2023 uploaded transfer of eessi-2023.06-software-linux-aarch64-neoverse_n1-1694224597.tar.gz to S3 bucket succeeded

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eessi-bot bot commented Sep 8, 2023

New job on instance eessi-bot-citc-aws for architecture aarch64-neoverse_v1 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_330/7234

date job status comment
Sep 08 20:40:21 UTC 2023 submitted job id 7234 awaits release by job manager
Sep 08 20:41:23 UTC 2023 released job awaits launch by Slurm scheduler
Sep 08 20:44:44 UTC 2023 running job 7234 is running
Sep 09 00:59:27 UTC 2023 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-7234.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-neoverse_v1-1694220874.tar.gzsize: 1440 MiB (1509989285 bytes)
entries: 130768
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NSPR/4.32-GCCcore-11.2.0.lua
NSS/3.69-GCCcore-11.2.0.lua
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PCRE/8.45-GCCcore-11.2.0.lua
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pkgconf/1.8.0-GCCcore-11.2.0.lua
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x264/20210613-GCCcore-11.2.0.lua
x265/3.5-GCCcore-11.2.0.lua
zstd/1.5.0-GCCcore-11.2.0.lua
software under 2023.06/software/linux/aarch64/neoverse_v1/software
Bison/3.7.6-GCCcore-11.2.0
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FFmpeg/4.3.2-GCCcore-11.2.0
ffnvcodec/11.1.5.2
fontconfig/2.13.94-GCCcore-11.2.0
freetype/2.11.0-GCCcore-11.2.0
FriBidi/1.0.10-GCCcore-11.2.0
GLib/2.69.1-GCCcore-11.2.0
gnuplot/5.4.2-GCCcore-11.2.0
GObject-Introspection/1.68.0-GCCcore-11.2.0
graphite2/1.3.14-GCCcore-11.2.0
gzip/1.10-GCCcore-11.2.0
HarfBuzz/2.8.2-GCCcore-11.2.0
ICU/69.1-GCCcore-11.2.0
JasPer/2.0.33-GCCcore-11.2.0
LAME/3.100-GCCcore-11.2.0
libcerf/1.17-GCCcore-11.2.0
libdrm/2.4.107-GCCcore-11.2.0
libgd/2.3.3-GCCcore-11.2.0
libGLU/9.0.2-GCCcore-11.2.0
libglvnd/1.3.3-GCCcore-11.2.0
libiconv/1.16-GCCcore-11.2.0
libjpeg-turbo/2.0.6-GCCcore-11.2.0
libpng/1.6.37-GCCcore-11.2.0
libunwind/1.5.0-GCCcore-11.2.0
LLVM/12.0.1-GCCcore-11.2.0
lz4/1.9.3-GCCcore-11.2.0
Mako/1.1.4-GCCcore-11.2.0
Mesa/21.1.7-GCCcore-11.2.0
Meson/0.58.2-GCCcore-11.2.0
METIS/5.1.0-GCCcore-11.2.0
MPFR/4.1.0-GCCcore-11.2.0
NASM/2.15.05-GCCcore-11.2.0
netCDF/4.8.1-gompi-2021b
Ninja/1.10.2-GCCcore-11.2.0
NSPR/4.32-GCCcore-11.2.0
NSS/3.69-GCCcore-11.2.0
OpenFOAM/v2112-foss-2021b
Pango/1.48.8-GCCcore-11.2.0
ParaView/5.9.1-foss-2021b-mpi
PCRE2/10.37-GCCcore-11.2.0
PCRE/8.45-GCCcore-11.2.0
pixman/0.40.0-GCCcore-11.2.0
pkgconf/1.8.0-GCCcore-11.2.0
Python/2.7.18-GCCcore-11.2.0-bare
Qt5/5.15.2-GCCcore-11.2.0
re2c/2.2-GCCcore-11.2.0
SCOTCH/6.1.2-gompi-2021b
snappy/1.1.9-GCCcore-11.2.0
X11/20210802-GCCcore-11.2.0
x264/20210613-GCCcore-11.2.0
x265/3.5-GCCcore-11.2.0
zstd/1.5.0-GCCcore-11.2.0
other under 2023.06/software/linux/aarch64/neoverse_v1
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp
Sep 09 08:14:11 UTC 2023 uploaded transfer of eessi-2023.06-software-linux-aarch64-neoverse_v1-1694220874.tar.gz to S3 bucket succeeded

@laraPPr laraPPr added pilot-2021.06 ready-to-deploy Mark a PR as ready to deploy labels Sep 9, 2023
@boegel boegel added bot:deploy Ask bot to deploy missing software installations to EESSI and removed ready-to-deploy Mark a PR as ready to deploy labels Sep 9, 2023
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boegel commented Sep 9, 2023

All 8 staging PRs merged, deployment under way...

eessi-2023.06-eb-4.8.0-2021b.yml Outdated Show resolved Hide resolved
@boegel boegel merged commit 1c11b95 into EESSI:2023.06 Sep 9, 2023
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trz42 pushed a commit to trz42/software-layer that referenced this pull request Apr 17, 2024
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